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The map label for this gene is 86748205

Identifier: 86748205

GI number: 86748205

Start: 1239310

End: 1240470

Strand: Direct

Name: 86748205

Synonym: RPB_1080

Alternate gene names: NA

Gene position: 1239310-1240470 (Clockwise)

Preceding gene: 86748202

Following gene: 86748206

Centisome position: 23.24

GC content: 65.72

Gene sequence:

>1161_bases
ATGAGCAGAGCATCCAATGCCCTCAAGCGCCCGCCGGTCACGGCGCCCTCCGAGCCGGTGGGCGCAATCTCTCCGTTTCC
TGAGATTGAAATTGCGATCGACAAGCAGCGGCGGCGCGGCCGCGGCGCGCAATCCAACGAGTCGGGCCGCTACGAAGCCG
AGGCGCGGGTCGCGTTCGATGATGGCTGGCAGAGCCTCGACGAGCTGCCGCCGTTCAAGACCACGGTCGCGCTCGACACC
GCGCGGAAAGTCATCACCCGCAACGAGTCGCCGGATATCGGCTTCGATCGTTCGATCAATCCGTATCGCGGCTGCGAGCA
CGGCTGCGTCTATTGCTTCGCGCGGCCGACCCATGCCTATCTCGGCCTGTCGCCGGGGCTGGATTTCGAATCGCGGCTGT
TCGCCAAGCCGGATGCGCCGGCGCTGCTGGAGAAAGAACTCGCCGCTGCCGACTATCAGCCGCGGATGATCGCGATCGGT
ACCAATACCGACCCGTATCAGCCGATCGAGCGCGAGCACAAGATCATGCGGGGCGTTCTCGAAGTGCTGGAGAAGACCGG
CCATCCGGTCGGCATCGTCACCAAATCGGCGCTGGTCACGCGTGACATCGACATTCTGGCGCGGATGGCGAAGCGCCAGC
TCGCCAAGGTCGCGCTGTCGGTGACATCGCTGGATCCGAAACTGGCGCGCACCATGGAGCCGCGCGCCTCCGCGCCTGAG
AAGCGGCTGGAAGCGCTGAAGCGGCTCTCCGAGGCCGGGATTCCGACCACCGTGATGGTGGCGCCGGTGATCCCGGCGCT
CAACGATGTGGAGATCGAGCGCATCCTCGACGCCGCCGCCCATGCCGGCGTCAAGGAGGCCAGCTACGTGATGCTGCGGC
TGCCGCTGGAAGTGCGCGACCTGTTCCGCGAATGGCTGATGGCGAACTATCCGGATCGCTACCGCCACGTCTTCACCCTG
ATCCGCGACATGCGCGGCGGCCGCGACTACGATTCGCAATGGGGCACGCGGATGAAAGGCACCGGCCCGATCGCCTGGAT
GATCGGTCGCCGCTTCGAGACCGCCTGCGCGCGGCTCGGCCTCAACAAGCGCCGCTCGAAATTGACGACGGATCATTTCG
AAAAGCCGGAGCGGGCGGGGCAGCAGCTGAGTTTGTTCTAG

Upstream 100 bases:

>100_bases
TGCGATGCACAGATCGCAGGCGGCGGTCGACCGCAGCGGCCCGCTGTGGATCCGCCAAATATGTTCTTGATTTGTTCCTG
CGACCCGCTATCTTCGAACC

Downstream 100 bases:

>100_bases
CGGGGCTGCCACGCGCGCGGGACTGATGGGGAGGGGGCAAGTTCCGGCGGCTTCGAGGTCGCTTGAATAGCGGGCATGGC
GCTGAATTTCCGGTTGCGCG

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGRYEAEARVAFDDGWQSLDELPPFKTTVALDT
ARKVITRNESPDIGFDRSINPYRGCEHGCVYCFARPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIG
TNTDPYQPIEREHKIMRGVLEVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPE
KRLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRDLFREWLMANYPDRYRHVFTL
IRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFETACARLGLNKRRSKLTTDHFEKPERAGQQLSLF

Sequences:

>Translated_386_residues
MSRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGRYEAEARVAFDDGWQSLDELPPFKTTVALDT
ARKVITRNESPDIGFDRSINPYRGCEHGCVYCFARPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIG
TNTDPYQPIEREHKIMRGVLEVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPE
KRLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRDLFREWLMANYPDRYRHVFTL
IRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFETACARLGLNKRRSKLTTDHFEKPERAGQQLSLF
>Mature_385_residues
SRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGRYEAEARVAFDDGWQSLDELPPFKTTVALDTA
RKVITRNESPDIGFDRSINPYRGCEHGCVYCFARPTHAYLGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIGT
NTDPYQPIEREHKIMRGVLEVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPEK
RLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRDLFREWLMANYPDRYRHVFTLI
RDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFETACARLGLNKRRSKLTTDHFEKPERAGQQLSLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43230; Mature: 43099

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGRYEAEARVAFD
CCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEEEEH
DGWQSLDELPPFKTTVALDTARKVITRNESPDIGFDRSINPYRGCEHGCVYCFARPTHAY
HHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHE
LGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIGTNTDPYQPIEREHKIMRGVL
EECCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
EVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPE
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHH
KRLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRD
HHHHHHHHHHHCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
LFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFETACARLG
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
LNKRRSKLTTDHFEKPERAGQQLSLF
CHHHHHHCCHHHHCCHHHCCCCCCCC
>Mature Secondary Structure 
SRASNALKRPPVTAPSEPVGAISPFPEIEIAIDKQRRRGRGAQSNESGRYEAEARVAFD
CCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEEEEH
DGWQSLDELPPFKTTVALDTARKVITRNESPDIGFDRSINPYRGCEHGCVYCFARPTHAY
HHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHE
LGLSPGLDFESRLFAKPDAPALLEKELAAADYQPRMIAIGTNTDPYQPIEREHKIMRGVL
EECCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
EVLEKTGHPVGIVTKSALVTRDIDILARMAKRQLAKVALSVTSLDPKLARTMEPRASAPE
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHH
KRLEALKRLSEAGIPTTVMVAPVIPALNDVEIERILDAAAHAGVKEASYVMLRLPLEVRD
HHHHHHHHHHHCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH
LFREWLMANYPDRYRHVFTLIRDMRGGRDYDSQWGTRMKGTGPIAWMIGRRFETACARLG
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
LNKRRSKLTTDHFEKPERAGQQLSLF
CHHHHHHCCHHHHCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]