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The map label for this gene is gctB [H]

Identifier: 86748202

GI number: 86748202

Start: 1236563

End: 1237315

Strand: Direct

Name: gctB [H]

Synonym: RPB_1077

Alternate gene names: 86748202

Gene position: 1236563-1237315 (Clockwise)

Preceding gene: 86748201

Following gene: 86748205

Centisome position: 23.19

GC content: 68.13

Gene sequence:

>753_bases
ATGAGCGCGCTGCCTGCGACGTCCCGCGAAATCCTGATCGCCACCATCGCCGATCTGCTCGACGGCGTCCGCACCGTCGC
GGTCGGCGCGTCGTCGCCGATGCCGGCAGCCGGCGCGATGCTGCTGCGTGCCCGCAACGAGAGCCGCGGCCGCGAGCGCG
TGCGGGTGATCGTGCTCGGCTCGCGCCAGCATAATTTCTTCACCAACGGCTCGTTCGAACTGTTCGACGCCACCGCCCAA
GGCCGCATCGACGCGTTCTTCCTTGGCGGCGGGCAGATCGACGGGCAGGCCAACATCAATCTGGTCGGCACCGGCGACTA
TCCGGCGAGCACTGTGCGCTGGCCGGGCTCGTTCGGCTCCGCCTTCATGTATTATCTGATCCCGCGGGTGATCCTGTTCC
GCGAGGAACACTCGCCGCGGGTGCTGGTCGACAAGGTCGATTTCGTCAGCGCGCCGGGATCGAGCGAGGGCATTCATCGC
AGCGGCGGGCCGCATGCGCTGCTGACTGGCCTCGCGCTGTTCGACTTCGACAAGGAGAACAAGCGCTTTGCGCTGCGCAG
CGTGCATCGCGGCGGCTCGGCTGCCGCTGTCCGCGCCGCCACCGGCTTCGACTACGACGTGCCGGACGAGGTGCCGTTCA
CGCCGGAGCCGGATGCGGAAACGCTTTCGCTGCTGCGCGGCCGGGTCACCACCGAACTCGCCGAGTGCTATCCGCAATTC
GTCGAGACGATGGTGGCCGATCGCGCCGCGTGA

Upstream 100 bases:

>100_bases
CCGACTCGGCCGAAGTCGCACGCTACGCCAAGATGGCGCGCTCGGCCGACGGCTTCGCGGCCTACATGAAGGGCTTCGCG
CAGGCATTCGAGGCGGTGGC

Downstream 100 bases:

>100_bases
CGCGGCCGCTCAGAGGCGGCGCCGGCCGAGCGCCGCGCGCAGCCAGCCGATCAGCGCCCGCAAAGCCGCATGGATCGCGA
CGCGTTGCAGCTCCCGCCCA

Product: CoA transferase, subunit B

Products: NA

Alternate protein names: GCT small subunit [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSALPATSREILIATIADLLDGVRTVAVGASSPMPAAGAMLLRARNESRGRERVRVIVLGSRQHNFFTNGSFELFDATAQ
GRIDAFFLGGGQIDGQANINLVGTGDYPASTVRWPGSFGSAFMYYLIPRVILFREEHSPRVLVDKVDFVSAPGSSEGIHR
SGGPHALLTGLALFDFDKENKRFALRSVHRGGSAAAVRAATGFDYDVPDEVPFTPEPDAETLSLLRGRVTTELAECYPQF
VETMVADRAA

Sequences:

>Translated_250_residues
MSALPATSREILIATIADLLDGVRTVAVGASSPMPAAGAMLLRARNESRGRERVRVIVLGSRQHNFFTNGSFELFDATAQ
GRIDAFFLGGGQIDGQANINLVGTGDYPASTVRWPGSFGSAFMYYLIPRVILFREEHSPRVLVDKVDFVSAPGSSEGIHR
SGGPHALLTGLALFDFDKENKRFALRSVHRGGSAAAVRAATGFDYDVPDEVPFTPEPDAETLSLLRGRVTTELAECYPQF
VETMVADRAA
>Mature_249_residues
SALPATSREILIATIADLLDGVRTVAVGASSPMPAAGAMLLRARNESRGRERVRVIVLGSRQHNFFTNGSFELFDATAQG
RIDAFFLGGGQIDGQANINLVGTGDYPASTVRWPGSFGSAFMYYLIPRVILFREEHSPRVLVDKVDFVSAPGSSEGIHRS
GGPHALLTGLALFDFDKENKRFALRSVHRGGSAAAVRAATGFDYDVPDEVPFTPEPDAETLSLLRGRVTTELAECYPQFV
ETMVADRAA

Specific function: Catalyzes the transfer of the CoA moiety from acetyl-CoA to (R)-2-hydroxyglutarate and related compounds like glutaconate [H]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.12 [H]

Molecular weight: Translated: 26948; Mature: 26817

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00104 EPSP_SYNTHASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALPATSREILIATIADLLDGVRTVAVGASSPMPAAGAMLLRARNESRGRERVRVIVLG
CCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHEECCCCCCCCCEEEEEEEE
SRQHNFFTNGSFELFDATAQGRIDAFFLGGGQIDGQANINLVGTGDYPASTVRWPGSFGS
CCCCCEEECCCEEEEECCCCCCEEEEEECCCEECCCCEEEEEECCCCCCCEEECCCCHHH
AFMYYLIPRVILFREEHSPRVLVDKVDFVSAPGSSEGIHRSGGPHALLTGLALFDFDKEN
HHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEECCCCC
KRFALRSVHRGGSAAAVRAATGFDYDVPDEVPFTPEPDAETLSLLRGRVTTELAECYPQF
CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VETMVADRAA
HHHHHHHCCC
>Mature Secondary Structure 
SALPATSREILIATIADLLDGVRTVAVGASSPMPAAGAMLLRARNESRGRERVRVIVLG
CCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHEECCCCCCCCCEEEEEEEE
SRQHNFFTNGSFELFDATAQGRIDAFFLGGGQIDGQANINLVGTGDYPASTVRWPGSFGS
CCCCCEEECCCEEEEECCCCCCEEEEEECCCEECCCCEEEEEECCCCCCCEEECCCCHHH
AFMYYLIPRVILFREEHSPRVLVDKVDFVSAPGSSEGIHRSGGPHALLTGLALFDFDKEN
HHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHEECCCCC
KRFALRSVHRGGSAAAVRAATGFDYDVPDEVPFTPEPDAETLSLLRGRVTTELAECYPQF
CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VETMVADRAA
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7957258; 9083111 [H]