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The map label for this gene is nahR [H]

Identifier: 86747816

GI number: 86747816

Start: 775482

End: 776396

Strand: Reverse

Name: nahR [H]

Synonym: RPB_0690

Alternate gene names: 86747816

Gene position: 776396-775482 (Counterclockwise)

Preceding gene: 86747824

Following gene: 86747815

Centisome position: 14.56

GC content: 61.53

Gene sequence:

>915_bases
ATGAACGAAACGAATGAGAGCCTCGACCTCAATCTCTTGCGGGTCTTTCTCGCGATCTGGGACTTGCGCAGTCTCACGGC
AGCCGGGGACCGTCTCGGCCTGACGCAGCCCGCGATCAGTCATGCGTTGCGGCGCCTGCGCGATCGCTTCAACGATCCGC
TCTTCGTGCGCGCGGCGAACCGCATGCTACCCACCGACGCGGCCGTTCGTCTGCATGAGCCGCTCGATCAGGCATTCGCG
ATCATCAATCGCGCGCTCAAAGAGCGCGTCGCGTTCGATCCCCAGGTGACCCAGAGGACCTTCCGGATCGCGATGTCCGA
TATCGCCGAGGTCTACTCATTGCCTCAACTGATGACGAAACTGACACGTATCGCCCCGTTGGCGCGGATCGACGTCGTCC
CGCTTGCACCCGACGCGGTCGTCGGCGCGATGCGCTCGGGAGAAGTCGATCTGGCCATCGGCTACGTCAAGAACGGCGAG
GAGGACTGCAGCAGCATCGACATCTTCAACGATCGCTTCGTCTGCATCGTTCGCGCCGGTCACCCGATCGGCCGAACCGG
ACTCAGGAAGTCGAATTGCGCCGGGCTGCGCTTCTTCTATGCGAGAATAACTTCTCCGGTTCATCATCAACCGATCGAGC
AGTGGTTCTCGGACAGAGGCGCCGGACCTCAAATCGCCGTCCGCGGGCATTTCATGGTCGCGCCGGAGATCGTGCGCCAC
TCCGACTTGGCGGCGATTTTTCCCGAATCCCTGGCGCTCCGCCTTCACCGAGCGAAGGACTTTCGTCTGCTCGATCTGCC
GTTCGACCTGCCCCTGATCGAGGTGAAAGTGCACAGCCACTCGCGCTTCGCCAGCGACATGGGCATCAAATGGATGTGCG
AAACGGCTGCGAAGATCCTCAAGGAAGACGGTTAG

Upstream 100 bases:

>100_bases
ATTCCCACGCGCTCTCTCGACGGCTCGATCCATCATCGGATCATGAGCGATTTTTGATGGCGCATTGATGTAAGTCAAAT
TCATAGTTATAATCTGCATC

Downstream 100 bases:

>100_bases
CTCGGCTCGCACCGGACCTGCGCTGATCAACGCCGCAAAGGTCGGCTGCTGTGCATCGACGAACCAAAGCGCGACGAAGC
AGCGCAAGACCACGCCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRFNDPLFVRAANRMLPTDAAVRLHEPLDQAFA
IINRALKERVAFDPQVTQRTFRIAMSDIAEVYSLPQLMTKLTRIAPLARIDVVPLAPDAVVGAMRSGEVDLAIGYVKNGE
EDCSSIDIFNDRFVCIVRAGHPIGRTGLRKSNCAGLRFFYARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRH
SDLAAIFPESLALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKILKEDG

Sequences:

>Translated_304_residues
MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRFNDPLFVRAANRMLPTDAAVRLHEPLDQAFA
IINRALKERVAFDPQVTQRTFRIAMSDIAEVYSLPQLMTKLTRIAPLARIDVVPLAPDAVVGAMRSGEVDLAIGYVKNGE
EDCSSIDIFNDRFVCIVRAGHPIGRTGLRKSNCAGLRFFYARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRH
SDLAAIFPESLALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKILKEDG
>Mature_304_residues
MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRFNDPLFVRAANRMLPTDAAVRLHEPLDQAFA
IINRALKERVAFDPQVTQRTFRIAMSDIAEVYSLPQLMTKLTRIAPLARIDVVPLAPDAVVGAMRSGEVDLAIGYVKNGE
EDCSSIDIFNDRFVCIVRAGHPIGRTGLRKSNCAGLRFFYARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRH
SDLAAIFPESLALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKILKEDG

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=301, Percent_Identity=25.9136212624585, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081766, Length=261, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786820, Length=100, Percent_Identity=35, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34121; Mature: 34121

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRFNDPLFVRAAN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
RMLPTDAAVRLHEPLDQAFAIINRALKERVAFDPQVTQRTFRIAMSDIAEVYSLPQLMTK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRIAPLARIDVVPLAPDAVVGAMRSGEVDLAIGYVKNGEEDCSSIDIFNDRFVCIVRAG
HHHHCCHHHEEEEECCCHHHHHHHCCCCEEEEEEEECCCCHHHCCEEEECCCEEEEEECC
HPIGRTGLRKSNCAGLRFFYARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRH
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECEEEECHHHHHC
SDLAAIFPESLALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKIL
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHH
KEDG
HCCC
>Mature Secondary Structure
MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRFNDPLFVRAAN
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
RMLPTDAAVRLHEPLDQAFAIINRALKERVAFDPQVTQRTFRIAMSDIAEVYSLPQLMTK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTRIAPLARIDVVPLAPDAVVGAMRSGEVDLAIGYVKNGEEDCSSIDIFNDRFVCIVRAG
HHHHCCHHHEEEEECCCHHHHHHHCCCCEEEEEEEECCCCHHHCCEEEECCCEEEEEECC
HPIGRTGLRKSNCAGLRFFYARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRH
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECEEEECHHHHHC
SDLAAIFPESLALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKIL
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHH
KEDG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]