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The map label for this gene is ygiQ [C]

Identifier: 86747815

GI number: 86747815

Start: 773128

End: 775143

Strand: Reverse

Name: ygiQ [C]

Synonym: RPB_0689

Alternate gene names: 86747815

Gene position: 775143-773128 (Counterclockwise)

Preceding gene: 86747816

Following gene: 86747814

Centisome position: 14.54

GC content: 67.81

Gene sequence:

>2016_bases
ATGCACAGCGCCCCCGCCGAAAAGCCCTCGACGTCGTGGTCCCGTCACTTGGCCGACCCGGCCAAGGCGGCGCCCTTCCT
GCCGATGAGCCGCGCCGAGATGAAGGCGCTGGGGTGGGACGCCTGCGACATCGTGCTGGTGACCGGCGACGCCTATGTCG
ACCATCCGAGCTTCGGCATGGCGATCATCGGCCGGTTGCTGGAGGCGCAGGGTTTTCGCGTCGGCATCATCGCCCAGCCG
GACTGGCAGTCGGCCGAGCCGTTCAAGGCGCTGGGCCGGCCCAAGGTGTTTTTCGGCGTCACCGGCGGCAACATGGATTC
GATGGTCAACCGCTACACCGCGGACCGTCGGCTGCGCCACGACGACGCCTACACGCCGAACGGCGAGAGCGGCCGGCGGC
CGGACCGCTGCACCCTGGTCTACGCCCAGCGCTGCCGCGAAGCGTTCAAGGATGTGCCGATCGTGCTCGGCGGCATCGAG
GCGTCGCTGCGCCGCATCGCGCATTACGATTACTGGTCGGACAAGGTCCGCCGCTCGGTGCTGGCCGACGCCAAGGCGGA
TCTCCTGCTCTACGGCAACGCCGAGCGCGCCGTGATCGAGGTCGCACACCGGCTCAGGGCCGGCGAAGCGCCGCGCGCGC
TCGACGACATTCGTGGCGTCGCGCTGTTCCGCCGCGTGCCCGACAACTATACGGAACTGCACGCCGACGATCTCGACGCC
GCCGACGAAGGCGCCCGGCAGATGCGCGGCGATGTGGTGATCCGGCTGCCGAGCTGCGAGCAGGTCGAGCAGGACAAGGA
AGCCTATGCCCGCGCCTCGCGGGTGCTGCATCGTGAGAGCAACCCGGGCAATGCGCGGCCGCTGGTGCAGCGCCACGGCG
ACCGCGATCTGTGGCTCAACCCGCCGCCGGTTCCGCTCACCACCGCCGAGATGGACTCGGTCTACGATCTGCCCTACGCC
CGCGCGCCGCATCCGTCCTATGGCGACGCGAAGATCCCCGCCTGGGACATGATCAAGGCGTCGGTGACGATCATGCGCGG
CTGTTTCGGCGGCTGCACCTTCTGCTCGATCACCGAGCACGAGGGCCGCATCATCCAGAATCGTTCGGAAGGCTCGATCC
TGCGCGAGATCGAGAAGATCCGCGACAAGACGCCGGGCTTCACGGGGGTGATCTCCGACATCGGCGGGCCGACTGCGAAT
ATGTATCGGATGGCGTGCAACGATCCGAAGATCGAGGCGGCGTGCCGGCGGCCGTCCTGCGTGTTTCCGGAGATCTGTCC
GAACCTGAACACCTCGCACGACGACCTGATCCGGCTGTATCGCAAGGTGCGCGAAGTGAAGGGCATCAAGCGGGTGATGG
TCGCCTCGGGGGTGCGTTACGATCTGGCGGTGAAGAGCCCGCAATACATCAAGGAGCTCGTCACCCATCACGTCGGCGGC
TATCTGAAGATCGCGCCCGAGCACACCGAGCGCGGCCCGCTCGACAAGATGATGAAGCCGGGCATCGGCACCTATCACCG
CTTCAAGCAGATGTTCGACGCCGCCGCCGAGCAGGCCGGCAAGAAGTACTATCTGATCCCGTATTTCATCGCGGCGCATC
CGGGCACGACCGACGAGGACATGATGAACCTCGCGCTGTGGCTGAAGAAGAACCGCTACCGCGCCGACCAGGTGCAGACC
TTCCTGCCGTCGCCGATGGCGACCGCGACGGCGATGTATCACACCGGCGTCAATCCGCTGCGCGGCGTCCGCCGCGGCGG
CTCAGACAAGGTCGAGGCGATCAAGGGCCTGCGTCAGCGCCGGCTGCACAAGGCGTTCCTGCGCTATCACGACCCCGACA
ACTGGCCGGTGCTGCGCGAGGCGCTACGCCGGATGGGCCGCGCCGATCTGATCGGCCCGCGCCCCGACCAGCTGGTGCCG
GCGCATCAGCCCTCCGGCAACGGCACCCGACCGCCGCCCCGCGGTCCGGCCCGAACGCAGCGCTTCACCACCAAAGGGGT
GCGGGTGACGAAGTGA

Upstream 100 bases:

>100_bases
CCATGACGCGCACCGTGCTTCACGCGTGGATCGGCTGCGGCGCGAGCCGAGCCGACGGGGCGGTTGAACTCGCGGCGGCG
GGAGCTTATGCGTCGACGCC

Downstream 100 bases:

>100_bases
TCAAGATCTGATTACAGATCATTTCTATAAGAAAGATCTGTAAACGCATCAATTGACAAAGCGATATGATCCGCCTAGGT
GTCATTTCGATCAAAAATGA

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MHSAPAEKPSTSWSRHLADPAKAAPFLPMSRAEMKALGWDACDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQP
DWQSAEPFKALGRPKVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGESGRRPDRCTLVYAQRCREAFKDVPIVLGGIE
ASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLRAGEAPRALDDIRGVALFRRVPDNYTELHADDLDA
ADEGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPVPLTTAEMDSVYDLPYA
RAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEHEGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTAN
MYRMACNDPKIEAACRRPSCVFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG
YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDEDMMNLALWLKKNRYRADQVQT
FLPSPMATATAMYHTGVNPLRGVRRGGSDKVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALRRMGRADLIGPRPDQLVP
AHQPSGNGTRPPPRGPARTQRFTTKGVRVTK

Sequences:

>Translated_671_residues
MHSAPAEKPSTSWSRHLADPAKAAPFLPMSRAEMKALGWDACDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQP
DWQSAEPFKALGRPKVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGESGRRPDRCTLVYAQRCREAFKDVPIVLGGIE
ASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLRAGEAPRALDDIRGVALFRRVPDNYTELHADDLDA
ADEGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPVPLTTAEMDSVYDLPYA
RAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEHEGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTAN
MYRMACNDPKIEAACRRPSCVFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG
YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDEDMMNLALWLKKNRYRADQVQT
FLPSPMATATAMYHTGVNPLRGVRRGGSDKVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALRRMGRADLIGPRPDQLVP
AHQPSGNGTRPPPRGPARTQRFTTKGVRVTK
>Mature_671_residues
MHSAPAEKPSTSWSRHLADPAKAAPFLPMSRAEMKALGWDACDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQP
DWQSAEPFKALGRPKVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGESGRRPDRCTLVYAQRCREAFKDVPIVLGGIE
ASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAHRLRAGEAPRALDDIRGVALFRRVPDNYTELHADDLDA
ADEGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLNPPPVPLTTAEMDSVYDLPYA
RAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEHEGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTAN
MYRMACNDPKIEAACRRPSCVFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG
YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDEDMMNLALWLKKNRYRADQVQT
FLPSPMATATAMYHTGVNPLRGVRRGGSDKVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALRRMGRADLIGPRPDQLVP
AHQPSGNGTRPPPRGPARTQRFTTKGVRVTK

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=665, Percent_Identity=62.406015037594, Blast_Score=867, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 75181; Mature: 75181

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSAPAEKPSTSWSRHLADPAKAAPFLPMSRAEMKALGWDACDIVLVTGDAYVDHPSFGM
CCCCCCCCCCCCHHHHCCCHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCEECCCCHHH
AIIGRLLEAQGFRVGIIAQPDWQSAEPFKALGRPKVFFGVTGGNMDSMVNRYTADRRLRH
HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
DDAYTPNGESGRRPDRCTLVYAQRCREAFKDVPIVLGGIEASLRRIAHYDYWSDKVRRSV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHH
LADAKADLLLYGNAERAVIEVAHRLRAGEAPRALDDIRGVALFRRVPDNYTELHADDLDA
HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCH
ADEGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLN
HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC
PPPVPLTTAEMDSVYDLPYARAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEH
CCCCCEEHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
EGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTANMYRMACNDPKIEAACRRPSC
CCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHEEECCCCCCHHHHHCCCCC
VFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC
YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDED
EEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHH
MMNLALWLKKNRYRADQVQTFLPSPMATATAMYHTGVNPLRGVRRGGSDKVEAIKGLRQR
HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHH
RLHKAFLRYHDPDNWPVLREALRRMGRADLIGPRPDQLVPAHQPSGNGTRPPPRGPARTQ
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RFTTKGVRVTK
HHCCCCCEECC
>Mature Secondary Structure
MHSAPAEKPSTSWSRHLADPAKAAPFLPMSRAEMKALGWDACDIVLVTGDAYVDHPSFGM
CCCCCCCCCCCCHHHHCCCHHHCCCCCCCCHHHHHHCCCCCEEEEEEECCCEECCCCHHH
AIIGRLLEAQGFRVGIIAQPDWQSAEPFKALGRPKVFFGVTGGNMDSMVNRYTADRRLRH
HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
DDAYTPNGESGRRPDRCTLVYAQRCREAFKDVPIVLGGIEASLRRIAHYDYWSDKVRRSV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHH
LADAKADLLLYGNAERAVIEVAHRLRAGEAPRALDDIRGVALFRRVPDNYTELHADDLDA
HHCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCH
ADEGARQMRGDVVIRLPSCEQVEQDKEAYARASRVLHRESNPGNARPLVQRHGDRDLWLN
HHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC
PPPVPLTTAEMDSVYDLPYARAPHPSYGDAKIPAWDMIKASVTIMRGCFGGCTFCSITEH
CCCCCEEHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
EGRIIQNRSEGSILREIEKIRDKTPGFTGVISDIGGPTANMYRMACNDPKIEAACRRPSC
CCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHEEECCCCCCHHHHHCCCCC
VFPEICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLAVKSPQYIKELVTHHVGG
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC
YLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFDAAAEQAGKKYYLIPYFIAAHPGTTDED
EEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHH
MMNLALWLKKNRYRADQVQTFLPSPMATATAMYHTGVNPLRGVRRGGSDKVEAIKGLRQR
HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHH
RLHKAFLRYHDPDNWPVLREALRRMGRADLIGPRPDQLVPAHQPSGNGTRPPPRGPARTQ
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
RFTTKGVRVTK
HHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA