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The map label for this gene is 86747824

Identifier: 86747824

GI number: 86747824

Start: 784820

End: 785818

Strand: Reverse

Name: 86747824

Synonym: RPB_0698

Alternate gene names: NA

Gene position: 785818-784820 (Counterclockwise)

Preceding gene: 86747827

Following gene: 86747816

Centisome position: 14.74

GC content: 64.46

Gene sequence:

>999_bases
ATGGCCCCCCGTGCCAACTGGAAAGGCTTTTTGCGGCTGTCGCTGGTGACATGCCCGGTGGCGCTGTTTCCGGCCACGTC
GGACGCCGAGAAGATCAGCTTCAACCAGATCAACCGCAACACCGGCCATCGCATCAAATACCTGAAAGTCGACGCCGACA
CCGGCGAGGAGGTCGCCTCCGACGACATCATGAAGGGCTACAAGGTCGATACCGACAATTATATCGAAATCACCAAGGAC
GAACTCGACGCCATCGCGCTGGAATCGACCCGCACGATCGACATCGATCAGTTCGTGCCGAAATCCGAGATCGACGATCT
GTATCTGGTGCGGCCGTACTACATCGTGCCCGACGGCAAGGTCGGCCATGACGCCTATGCGGTGATCCGCGAGACCATCC
GATCGATGGACCGCGTGGCGCTGGCCCGCGTGGTGCTGACCAATCGCGAGCACGTCATCGCGCTGGAGGCGCGCGACAAC
GGCCTGATGGGGATGCTGCTGCGCTATCCGTACGAAGTCCGCGACGCCGCGGATTATTTCGACGACATTCAGGACGTCAA
GATCACCAAGGACATGCTCGATCTCGCCCGGCATATCGTCGAGCAGAAGTCCGGCCATTTCCAGCCCGAGCTGTTCGAGG
ATCACTACGAGAGCGCGCTGACGGAGCTGATCAACAAGAAGGTCAGCGGCCAGCCGCTCGCCGCCAAGGCGCGCCCGCGC
GGCGACAACGTCGTCGACCTGATGGACGCGCTACGCCGGAGCCTCGGCGACGCCAAGGCGCCGCCGGCCGCGAAGGCTGC
GCCGGCCGCGAAGGCTGCCGCCGCGGAGAAGCCTGTCGCGACATCCGCCAAGCCGAAGAAGCGCAAGACCGCGCCCGGCC
AGAAGGAAATGCTGCTGCCGATCAGCGGCGCCAAGACCGCCGGCTCGAAAGAGGAGGCCGGCAAGGCAAAGAAGCCCGCA
CGCAGCACCGCCGGCGGCAAGGCCCGCAAGGCGGGGTGA

Upstream 100 bases:

>100_bases
CCGGCAATATAGGAGTAGCAGGGAACGAATCCGAGTCTCTGCGCTTGAGTCCGGCTTGTTCGGTTCCGCGTAGTGTCCTG
CGTCAGTGGAGTATGCGTCA

Downstream 100 bases:

>100_bases
GGTCAGCCGACCGGTATCAATCCGCGGAACTCGCGATTGAAATGCACCAGCGGTTCCTTCGCCGGCTGAACACGGGCGGC
TTTCACCTCGCAGAAGAACA

Product: Ku-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MAPRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRNTGHRIKYLKVDADTGEEVASDDIMKGYKVDTDNYIEITKD
ELDAIALESTRTIDIDQFVPKSEIDDLYLVRPYYIVPDGKVGHDAYAVIRETIRSMDRVALARVVLTNREHVIALEARDN
GLMGMLLRYPYEVRDAADYFDDIQDVKITKDMLDLARHIVEQKSGHFQPELFEDHYESALTELINKKVSGQPLAAKARPR
GDNVVDLMDALRRSLGDAKAPPAAKAAPAAKAAAAEKPVATSAKPKKRKTAPGQKEMLLPISGAKTAGSKEEAGKAKKPA
RSTAGGKARKAG

Sequences:

>Translated_332_residues
MAPRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRNTGHRIKYLKVDADTGEEVASDDIMKGYKVDTDNYIEITKD
ELDAIALESTRTIDIDQFVPKSEIDDLYLVRPYYIVPDGKVGHDAYAVIRETIRSMDRVALARVVLTNREHVIALEARDN
GLMGMLLRYPYEVRDAADYFDDIQDVKITKDMLDLARHIVEQKSGHFQPELFEDHYESALTELINKKVSGQPLAAKARPR
GDNVVDLMDALRRSLGDAKAPPAAKAAPAAKAAAAEKPVATSAKPKKRKTAPGQKEMLLPISGAKTAGSKEEAGKAKKPA
RSTAGGKARKAG
>Mature_331_residues
APRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRNTGHRIKYLKVDADTGEEVASDDIMKGYKVDTDNYIEITKDE
LDAIALESTRTIDIDQFVPKSEIDDLYLVRPYYIVPDGKVGHDAYAVIRETIRSMDRVALARVVLTNREHVIALEARDNG
LMGMLLRYPYEVRDAADYFDDIQDVKITKDMLDLARHIVEQKSGHFQPELFEDHYESALTELINKKVSGQPLAAKARPRG
DNVVDLMDALRRSLGDAKAPPAAKAAPAAKAAAAEKPVATSAKPKKRKTAPGQKEMLLPISGAKTAGSKEEAGKAKKPAR
STAGGKARKAG

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 36458; Mature: 36327

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRNTGHRIKYLKVDADTGEEVAS
CCCCCCCCCEEEEEHHHCCEEEECCCCCCHHCCHHHCCCCCCCEEEEEEEECCCCHHHHH
DDIMKGYKVDTDNYIEITKDELDAIALESTRTIDIDQFVPKSEIDDLYLVRPYYIVPDGK
HHHHCCEECCCCCEEEEEHHHHHEEEECCCCEEEHHHCCCCCCCCCEEEECCEEECCCCC
VGHDAYAVIRETIRSMDRVALARVVLTNREHVIALEARDNGLMGMLLRYPYEVRDAADYF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHH
DDIQDVKITKDMLDLARHIVEQKSGHFQPELFEDHYESALTELINKKVSGQPLAAKARPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GDNVVDLMDALRRSLGDAKAPPAAKAAPAAKAAAAEKPVATSAKPKKRKTAPGQKEMLLP
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
ISGAKTAGSKEEAGKAKKPARSTAGGKARKAG
ECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
APRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRNTGHRIKYLKVDADTGEEVAS
CCCCCCCCEEEEEHHHCCEEEECCCCCCHHCCHHHCCCCCCCEEEEEEEECCCCHHHHH
DDIMKGYKVDTDNYIEITKDELDAIALESTRTIDIDQFVPKSEIDDLYLVRPYYIVPDGK
HHHHCCEECCCCCEEEEEHHHHHEEEECCCCEEEHHHCCCCCCCCCEEEECCEEECCCCC
VGHDAYAVIRETIRSMDRVALARVVLTNREHVIALEARDNGLMGMLLRYPYEVRDAADYF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHH
DDIQDVKITKDMLDLARHIVEQKSGHFQPELFEDHYESALTELINKKVSGQPLAAKARPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GDNVVDLMDALRRSLGDAKAPPAAKAAPAAKAAAAEKPVATSAKPKKRKTAPGQKEMLLP
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
ISGAKTAGSKEEAGKAKKPARSTAGGKARKAG
ECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA