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The map label for this gene is ycjD [C]

Identifier: 86747773

GI number: 86747773

Start: 733318

End: 733734

Strand: Direct

Name: ycjD [C]

Synonym: RPB_0647

Alternate gene names: 86747773

Gene position: 733318-733734 (Clockwise)

Preceding gene: 86747772

Following gene: 86747774

Centisome position: 13.75

GC content: 65.71

Gene sequence:

>417_bases
GTGCCCCAGGCACGAACGCTGATGGCACGCACAGTCGACCAGCGGATCCAACGAGCCCGGAGTTTCCGTCGAAATCCGAC
GGACGCCGAGCGCAAGCTGTGGCAGCGCCTGCGTCGACCGGGCTTTGCCGAGGCCCATTTCCGCCGGCAAGCGACGATCG
GCCCATACTTTGCGGACTTTGCCTGCCATGCCCTCCGACTGGTCATCGAAATCGACGGAGGCCAGCACGCCGGATCGAAC
TCCGACGTCGTTCGAACGGGCTATCTCGAGGCCGCGGGCTATCGCGTGCTCAGGTTCTGGAATAACGATGTTCTGAACAA
CATCGACGGCGTCATGCAGATCATCGTAGACGCCGTGCGCGCGGCGCCCCCCACCCCCGACCCCTCCCCGCCGCAAGAGC
GGGGGGAGGGGAGCTGA

Upstream 100 bases:

>100_bases
ACCGCGGTGAAGTAAGCACTCCGCAACCTGCACCACCGTCATGGGTGGGCTCTTCTCCCCTCCCCCCGCTCTTGCGGCGG
GGAGGGGTCGGGGGTGGGGG

Downstream 100 bases:

>100_bases
TCATGCTCAAGCAGTCCGCACGATGCTGAAGAACGCCGTCTTTCAATCCAAATTCCTGCCCTATTGGCTGGTGCTGCCGC
AGCTCGCGGTGGTGCTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MPQARTLMARTVDQRIQRARSFRRNPTDAERKLWQRLRRPGFAEAHFRRQATIGPYFADFACHALRLVIEIDGGQHAGSN
SDVVRTGYLEAAGYRVLRFWNNDVLNNIDGVMQIIVDAVRAAPPTPDPSPPQERGEGS

Sequences:

>Translated_138_residues
MPQARTLMARTVDQRIQRARSFRRNPTDAERKLWQRLRRPGFAEAHFRRQATIGPYFADFACHALRLVIEIDGGQHAGSN
SDVVRTGYLEAAGYRVLRFWNNDVLNNIDGVMQIIVDAVRAAPPTPDPSPPQERGEGS
>Mature_137_residues
PQARTLMARTVDQRIQRARSFRRNPTDAERKLWQRLRRPGFAEAHFRRQATIGPYFADFACHALRLVIEIDGGQHAGSNS
DVVRTGYLEAAGYRVLRFWNNDVLNNIDGVMQIIVDAVRAAPPTPDPSPPQERGEGS

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=116, Percent_Identity=43.9655172413793, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15598; Mature: 15467

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQARTLMARTVDQRIQRARSFRRNPTDAERKLWQRLRRPGFAEAHFRRQATIGPYFADF
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
ACHALRLVIEIDGGQHAGSNSDVVRTGYLEAAGYRVLRFWNNDVLNNIDGVMQIIVDAVR
HHHHHHHHEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AAPPTPDPSPPQERGEGS
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PQARTLMARTVDQRIQRARSFRRNPTDAERKLWQRLRRPGFAEAHFRRQATIGPYFADF
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
ACHALRLVIEIDGGQHAGSNSDVVRTGYLEAAGYRVLRFWNNDVLNNIDGVMQIIVDAVR
HHHHHHHHEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AAPPTPDPSPPQERGEGS
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]