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The map label for this gene is ybeY [C]

Identifier: 86747718

GI number: 86747718

Start: 664783

End: 665370

Strand: Direct

Name: ybeY [C]

Synonym: RPB_0592

Alternate gene names: 86747718

Gene position: 664783-665370 (Clockwise)

Preceding gene: 86747717

Following gene: 86747719

Centisome position: 12.47

GC content: 67.52

Gene sequence:

>588_bases
ATGTCACAATTCAAAACCGGGAGCCGTGCCGATTGCATCGGGCCGGCTCGGGGCAGTAATTTCGGACCGATGAGTCATTC
CGCCGTTCCCGCCACCGAGGTCGTGATCGCCGCCGATTGCTGGCGCTCCGAAGCCTCCGCCGAAGCGACCGTGCTGCGCG
CCATCGAAGCCGCCGCCGCGATGGTCGACGCCGACACCGGCGAGGCCGAACTCGCCGTGATGCTGACCGACGACGACGGC
ATCCGCGCGCTCAACGCCTCGTATCGCGGCCAGGACAAGCCGACCAATGTGCTGTCGTTCCCGGCGCCGCAGCCGGACTA
TCAGGGCGCTGCGCAGGGCTCGGACGTCGCGCCGAAACTGCTCGGCGACATCGCGATCGCGTACCAGACGGTGCGCCGCG
AGGCCGACGACGAGGGCAAGCGGTTCGATCATCATCTCAGCCATCTGGCGGTCCACGGCTTCCTGCATCTGGTCGGCTAC
GACCACGAGACCGACGCCGAGGCCGAGACGATGGAAGCCGCCGAGCGCCGCATTCTCGCCGGCCTCGGCATTCCGGATCC
CTATGCCGATCAGGATCGGGTGAGCTGA

Upstream 100 bases:

>100_bases
TCAAGTTCACCGCCGAGGACGTCATTCGCCACGAATTGGTGGCGCGGATCGTCGCCGCCTATGAGGGGATCCCGCCGAAA
CCGGCGGGCGGCGCAGCCTG

Downstream 100 bases:

>100_bases
CATGCCGGACGGCGACAGAGCGCAGAGCGCAGCGCAGCCAGCGGAGCAGGACTTACCACGCGGCCAGCAACTGCCGGCGG
TGGTGCATCAGGGCGAGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSQFKTGSRADCIGPARGSNFGPMSHSAVPATEVVIAADCWRSEASAEATVLRAIEAAAAMVDADTGEAELAVMLTDDDG
IRALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAYQTVRREADDEGKRFDHHLSHLAVHGFLHLVGY
DHETDAEAETMEAAERRILAGLGIPDPYADQDRVS

Sequences:

>Translated_195_residues
MSQFKTGSRADCIGPARGSNFGPMSHSAVPATEVVIAADCWRSEASAEATVLRAIEAAAAMVDADTGEAELAVMLTDDDG
IRALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAYQTVRREADDEGKRFDHHLSHLAVHGFLHLVGY
DHETDAEAETMEAAERRILAGLGIPDPYADQDRVS
>Mature_194_residues
SQFKTGSRADCIGPARGSNFGPMSHSAVPATEVVIAADCWRSEASAEATVLRAIEAAAAMVDADTGEAELAVMLTDDDGI
RALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAYQTVRREADDEGKRFDHHLSHLAVHGFLHLVGYD
HETDAEAETMEAAERRILAGLGIPDPYADQDRVS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=121, Percent_Identity=47.1074380165289, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_RHOP2 (Q2J2K7)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484214.1
- ProteinModelPortal:   Q2J2K7
- SMR:   Q2J2K7
- STRING:   Q2J2K7
- GeneID:   3908285
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0592
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   IAMINEE
- ProtClustDB:   CLSK818282
- BioCyc:   RPAL316058:RPB_0592-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20763; Mature: 20632

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFKTGSRADCIGPARGSNFGPMSHSAVPATEVVIAADCWRSEASAEATVLRAIEAAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCHHHHHHHHHHHHHH
MVDADTGEAELAVMLTDDDGIRALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKL
HHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHH
LGDIAIAYQTVRREADDEGKRFDHHLSHLAVHGFLHLVGYDHETDAEAETMEAAERRILA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GLGIPDPYADQDRVS
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQFKTGSRADCIGPARGSNFGPMSHSAVPATEVVIAADCWRSEASAEATVLRAIEAAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCHHHHHHHHHHHHHH
MVDADTGEAELAVMLTDDDGIRALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKL
HHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHH
LGDIAIAYQTVRREADDEGKRFDHHLSHLAVHGFLHLVGYDHETDAEAETMEAAERRILA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
GLGIPDPYADQDRVS
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA