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The map label for this gene is atpH

Identifier: 86747394

GI number: 86747394

Start: 301984

End: 302544

Strand: Reverse

Name: atpH

Synonym: RPB_0268

Alternate gene names: 86747394

Gene position: 302544-301984 (Counterclockwise)

Preceding gene: 86747396

Following gene: 86747393

Centisome position: 5.67

GC content: 62.92

Gene sequence:

>561_bases
GTGGCATCTGAAGATCCATCGGTATCCGGAGTCTCCGGTCGTTACGCGACTGCCCTGTTTGAATTGGCGCGCGATGAAAA
AGTGGTCGACGCCGTCACGGCCGACCTCGACAAATTCAAGGCCATGCTGGCGGACAGTCCAGACCTGTTGCGGCTGGTTC
GCAGTCCGGTGTTCGGCGCCGAGGCGCAGGCCAAGGCGCTCGGCGCGGTGCTCGACAAAGCTGGGATCACCGGCATCAGC
GCCAACTTCCTGAAGCTGCTTGCCGCCAATCGGCGCCTGTTCGTGGTCGCCGACGTGATTCGCGCCTATCGGGCGCTGGT
CGCGAAGTTCAAGGGCGAGGCGACCGCCGACGTCACCGTTGCCGAGACGCTCGGCGACAAGAACCTCGAAGCGCTGAAGG
CGGCGCTGAAGGCGGTGACCGGCAAGGACGTCACGCTCAACATCAACGTCGATCCGGCGATCATCGGCGGGCTTGTCGTC
AAGCTCGGCAGCCGCATGGTCGACAGTTCGATCCGCACCAAACTCAATTCGATCAAGCACGCGATGAAAGAGGCAGGCTG
A

Upstream 100 bases:

>100_bases
AATCGAAGTCCAGCTTGAATTCCAAGGGCTTAAATCGGGGGCGCCGCGACTTGGCGACGGTTTCGACCTTGGCAATTTGA
CAGCACAAAAGAGCGCGTCT

Downstream 100 bases:

>100_bases
TGGACATCCGCGCCGCGGAAATTTCCGCGATCCTCAAGGACCAGATCAAGAACTTCGGTCAGGAAGCCGAAGTCACCGAA
GTCGGACAGGTGCTGTCCGT

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MASEDPSVSGVSGRYATALFELARDEKVVDAVTADLDKFKAMLADSPDLLRLVRSPVFGAEAQAKALGAVLDKAGITGIS
ANFLKLLAANRRLFVVADVIRAYRALVAKFKGEATADVTVAETLGDKNLEALKAALKAVTGKDVTLNINVDPAIIGGLVV
KLGSRMVDSSIRTKLNSIKHAMKEAG

Sequences:

>Translated_186_residues
MASEDPSVSGVSGRYATALFELARDEKVVDAVTADLDKFKAMLADSPDLLRLVRSPVFGAEAQAKALGAVLDKAGITGIS
ANFLKLLAANRRLFVVADVIRAYRALVAKFKGEATADVTVAETLGDKNLEALKAALKAVTGKDVTLNINVDPAIIGGLVV
KLGSRMVDSSIRTKLNSIKHAMKEAG
>Mature_185_residues
ASEDPSVSGVSGRYATALFELARDEKVVDAVTADLDKFKAMLADSPDLLRLVRSPVFGAEAQAKALGAVLDKAGITGISA
NFLKLLAANRRLFVVADVIRAYRALVAKFKGEATADVTVAETLGDKNLEALKAALKAVTGKDVTLNINVDPAIIGGLVVK
LGSRMVDSSIRTKLNSIKHAMKEAG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=180, Percent_Identity=31.1111111111111, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71984710, Length=180, Percent_Identity=33.8888888888889, Blast_Score=106, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71984717, Length=181, Percent_Identity=33.7016574585635, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320504, Length=181, Percent_Identity=30.3867403314917, Blast_Score=79, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24647054, Length=171, Percent_Identity=36.8421052631579, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24647056, Length=98, Percent_Identity=40.8163265306122, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_RHOP2 (Q2J3I1)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_483890.1
- STRING:   Q2J3I1
- GeneID:   3907896
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0268
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   FIAICGE
- ProtClustDB:   PRK05758
- BioCyc:   RPAL316058:RPB_0268-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19538; Mature: 19407

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEDPSVSGVSGRYATALFELARDEKVVDAVTADLDKFKAMLADSPDLLRLVRSPVFGA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
EAQAKALGAVLDKAGITGISANFLKLLAANRRLFVVADVIRAYRALVAKFKGEATADVTV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AETLGDKNLEALKAALKAVTGKDVTLNINVDPAIIGGLVVKLGSRMVDSSIRTKLNSIKH
HHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKEAG
HHHHCC
>Mature Secondary Structure 
ASEDPSVSGVSGRYATALFELARDEKVVDAVTADLDKFKAMLADSPDLLRLVRSPVFGA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
EAQAKALGAVLDKAGITGISANFLKLLAANRRLFVVADVIRAYRALVAKFKGEATADVTV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AETLGDKNLEALKAALKAVTGKDVTLNINVDPAIIGGLVVKLGSRMVDSSIRTKLNSIKH
HHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKEAG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA