Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 86747301

GI number: 86747301

Start: 188622

End: 189902

Strand: Reverse

Name: ugpB [H]

Synonym: RPB_0174

Alternate gene names: 86747301

Gene position: 189902-188622 (Counterclockwise)

Preceding gene: 86747302

Following gene: 86747300

Centisome position: 3.56

GC content: 63.31

Gene sequence:

>1281_bases
ATGTTGCGAACCTGGATGGCAGCGGCGGCTTTCACGCTCGCCGCCGGCTGCGCTCACGCGCAGACGCAGACCGAAGTCGT
GCTGCAATATCCCTATCCGGAGCTGTTCACCGAGACCCACAAGCAGATCGCGGCCGAATTCGCCAAGGTGCATCCGGAAA
TCAAGGTGACGTTCCGCGCGCCTTACGAATCCTATGAAGAAGGCACCCAGAAGGTGCTGCGCGAGGCGGTCACCAATCAG
GTCCCCGACGTCACCTTCCAGGGCCTGAACCGCGTCCGCGTGCTGGTCGACAAGAACATTCCGGCCGAACTCGACGGCTA
CATCGCCGCCGAAAAGGATTTCGACAAGCAGGGCTTCCACCAGGCGATGTACGACATCGGCACCGCCAGCGGAAAGGTCT
ACGCGCTGCCGTTCGCGATCTCGCTGCCGATCGTCTACGTCAATGTCGATCTGGTGAAACAGGTCGGCGGCGATCCGAAC
AATCTGCCGACCAGCTGGGACGGCCTGATCGACCTCGCCAAGAAGGTCAAGGCGCTCGGCCCGGACTATAACGGCATCAC
CTATGCGTGGGACATCACCGGCAACTGGCTGTGGCAGGCGCCGGTGTTCGCCCGCGGCGGCACCATGCTGAACGCGGACG
AAACCAAGGTGGCGTTCGATGGTCCCGAAGGCCAGTTCGCCATGAAGCAGATCGCCCGCCTCGTCACCGAGGGCGGCATG
CCGAATCTCGACCAGCCGTCGATGCGCGCCGCCTTCGCGGCGGGCAAGACCGGCATCCACATCACCTCGACCTCCGATCT
CAACAAGACCACGCAGATGATCGGCGGCAAGTTCACGCTGAAGACCCACATCTTCCCGGACGTGGTCAAGCCGAACGGCC
GTCTGCCGGCCGGCGGCAACGTGGTGCTGATCACCGCCAAGGACAAGGCCAAGCGTGACGCGGCCTGGGAAGTGGTGAAG
TTCTGGACCGGCCCGAAGGGCGCCGCGATCATGGCGGAGACCACCGGCTACATGCCGCCCAACAAGGTCGCCAACGACGT
CTATCTGAAGGACTTCTACGAGAAGAACCCGAACAACTACACCGCGGTGAGCCAGCTCGCGCTGCTGACCAAATGGTACG
CGTTCCCGGGCGACAACGGCCTCAAGATCACCGACGTGATCAAGGATCATCTCAACTCGATCGTGACCGGAACCCGGGCC
AAGGAGCCGGACGCGGTGCTCGCCGACATGACCAAGGACGTGCAGAAGCTGCTGCCGAAATCGGTCGGCGCGGCGCGCTG
A

Upstream 100 bases:

>100_bases
GCTGGTCGTGGCCTTCCTGCTCGCCCAGCGCCGGTTCATCGAAGGCATCACGATGACCGGCCTGAAATAACGACGTCCCT
CACACACAAGGAGATCGATC

Downstream 100 bases:

>100_bases
TACGCAACAACCTGCGCGGAGCGGGCTCGCCCGCTCCGCTTTCGTTCCGGGAGGACGTCATGAAACTGATCCAGCTCAGC
GATATCCATCTGACGGCGCC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLRTWMAAAAFTLAAGCAHAQTQTEVVLQYPYPELFTETHKQIAAEFAKVHPEIKVTFRAPYESYEEGTQKVLREAVTNQ
VPDVTFQGLNRVRVLVDKNIPAELDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNVDLVKQVGGDPN
NLPTSWDGLIDLAKKVKALGPDYNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMKQIARLVTEGGM
PNLDQPSMRAAFAAGKTGIHITSTSDLNKTTQMIGGKFTLKTHIFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYEKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVTGTRA
KEPDAVLADMTKDVQKLLPKSVGAAR

Sequences:

>Translated_426_residues
MLRTWMAAAAFTLAAGCAHAQTQTEVVLQYPYPELFTETHKQIAAEFAKVHPEIKVTFRAPYESYEEGTQKVLREAVTNQ
VPDVTFQGLNRVRVLVDKNIPAELDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNVDLVKQVGGDPN
NLPTSWDGLIDLAKKVKALGPDYNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMKQIARLVTEGGM
PNLDQPSMRAAFAAGKTGIHITSTSDLNKTTQMIGGKFTLKTHIFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYEKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVTGTRA
KEPDAVLADMTKDVQKLLPKSVGAAR
>Mature_426_residues
MLRTWMAAAAFTLAAGCAHAQTQTEVVLQYPYPELFTETHKQIAAEFAKVHPEIKVTFRAPYESYEEGTQKVLREAVTNQ
VPDVTFQGLNRVRVLVDKNIPAELDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNVDLVKQVGGDPN
NLPTSWDGLIDLAKKVKALGPDYNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMKQIARLVTEGGM
PNLDQPSMRAAFAAGKTGIHITSTSDLNKTTQMIGGKFTLKTHIFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK
FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYEKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVTGTRA
KEPDAVLADMTKDVQKLLPKSVGAAR

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=380, Percent_Identity=23.6842105263158, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46615; Mature: 46615

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTWMAAAAFTLAAGCAHAQTQTEVVLQYPYPELFTETHKQIAAEFAKVHPEIKVTFRA
CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYESYEEGTQKVLREAVTNQVPDVTFQGLNRVRVLVDKNIPAELDGYIAAEKDFDKQGFH
CHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHH
QAMYDIGTASGKVYALPFAISLPIVYVNVDLVKQVGGDPNNLPTSWDGLIDLAKKVKALG
HHHHHHCCCCCEEEEEEEEEECCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
PDYNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMKQIARLVTEGGM
CCCCCEEEEEECCCCEEEECCEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCC
PNLDQPSMRAAFAAGKTGIHITSTSDLNKTTQMIGGKFTLKTHIFPDVVKPNGRLPAGGN
CCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCC
VVLITAKDKAKRDAAWEVVKFWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYEKNPNNY
EEEEEECCCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCCCH
TAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVTGTRAKEPDAVLADMTKDVQKLLPK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SVGAAR
HCCCCC
>Mature Secondary Structure
MLRTWMAAAAFTLAAGCAHAQTQTEVVLQYPYPELFTETHKQIAAEFAKVHPEIKVTFRA
CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PYESYEEGTQKVLREAVTNQVPDVTFQGLNRVRVLVDKNIPAELDGYIAAEKDFDKQGFH
CHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHH
QAMYDIGTASGKVYALPFAISLPIVYVNVDLVKQVGGDPNNLPTSWDGLIDLAKKVKALG
HHHHHHCCCCCEEEEEEEEEECCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
PDYNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMKQIARLVTEGGM
CCCCCEEEEEECCCCEEEECCEEECCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCC
PNLDQPSMRAAFAAGKTGIHITSTSDLNKTTQMIGGKFTLKTHIFPDVVKPNGRLPAGGN
CCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCC
VVLITAKDKAKRDAAWEVVKFWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYEKNPNNY
EEEEEECCCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCCCH
TAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVTGTRAKEPDAVLADMTKDVQKLLPK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SVGAAR
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA