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The map label for this gene is araQ [H]

Identifier: 86747302

GI number: 86747302

Start: 189933

End: 190769

Strand: Reverse

Name: araQ [H]

Synonym: RPB_0175

Alternate gene names: 86747302

Gene position: 190769-189933 (Counterclockwise)

Preceding gene: 86747303

Following gene: 86747301

Centisome position: 3.58

GC content: 64.76

Gene sequence:

>837_bases
ATGATCGACGCGCTGAAGCCGAACCCCTGGGCGGTGCTGCGCCATGTCGTGCTGCTGTGCGGGGCGCTGGTGGTGCTGAC
GCCGTTCATCTGGATGATCTCGACTGCGTCGAAGCCGCCGGCCGAGATCTACACCAGCGACGTGCATCTGATCCCGCATC
ACTTCGCCCTGTGGGACAATCTGCAGGAGGCCTTTGCCAAGTCCAATCTCGGGCGCTTCCTGCTCAACGGCCTGATCGTC
ACGGTGTCGATCTTCGCGCTGCAGGTGCTGGTCGCCTTGCCGGCGGCCTATGCGCTGGCGAAGCTGCGCTTCGTCGGGCG
CAAGACGTTGTTCGCACTGGTGCTGTTCGGCATTCTGATTCCGCCGCAGGCGACCGCGATCCCGGTGTTCCTGCTGCTGC
ACCAGATCGGCGCGCTCGACAGCTACGCGGCGCTGGTGCTGCCCTTCACCATCTCGGTGTTCGGCATCTTCCTGATGCGG
CAGTTCTTCATGACCGTGCCCGACGATCTGATCGACGCTGCGCGGATGGACGGCATCTCCGAATTCGGCATCGTCTGGCG
GGTGATGCTGCCGACCGCGATCCCGGCGGTCACCGCCTTCGGCATCTTCTCGGTGGTCGCCCACTGGAACGACTACTTCT
GGCCGCTGATCGTGCTCAACAGCGAGCAATTGCGGACGCCGCCGCTCGCGGTCGCGCATTTCCGCAACGCCGAGGCCGGC
ACCAATTACGGCCCGCTGATGGCCGCGGCGCTGGTGATCATCACGCCGCTGGTCGTGGCCTTCCTGCTCGCCCAGCGCCG
GTTCATCGAAGGCATCACGATGACCGGCCTGAAATAA

Upstream 100 bases:

>100_bases
TCCGCTCCGGCTATGCCGCGGCGCTGACCGTGGTGTTCCTGGTGTTCGTGCTGGCGCTGACCCTGGTCAAGGCCCGCCTC
GCCGCCCGACAGGTGCACAC

Downstream 100 bases:

>100_bases
CGACGTCCCTCACACACAAGGAGATCGATCATGTTGCGAACCTGGATGGCAGCGGCGGCTTTCACGCTCGCCGCCGGCTG
CGCTCACGCGCAGACGCAGA

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MIDALKPNPWAVLRHVVLLCGALVVLTPFIWMISTASKPPAEIYTSDVHLIPHHFALWDNLQEAFAKSNLGRFLLNGLIV
TVSIFALQVLVALPAAYALAKLRFVGRKTLFALVLFGILIPPQATAIPVFLLLHQIGALDSYAALVLPFTISVFGIFLMR
QFFMTVPDDLIDAARMDGISEFGIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSEQLRTPPLAVAHFRNAEAG
TNYGPLMAAALVIITPLVVAFLLAQRRFIEGITMTGLK

Sequences:

>Translated_278_residues
MIDALKPNPWAVLRHVVLLCGALVVLTPFIWMISTASKPPAEIYTSDVHLIPHHFALWDNLQEAFAKSNLGRFLLNGLIV
TVSIFALQVLVALPAAYALAKLRFVGRKTLFALVLFGILIPPQATAIPVFLLLHQIGALDSYAALVLPFTISVFGIFLMR
QFFMTVPDDLIDAARMDGISEFGIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSEQLRTPPLAVAHFRNAEAG
TNYGPLMAAALVIITPLVVAFLLAQRRFIEGITMTGLK
>Mature_278_residues
MIDALKPNPWAVLRHVVLLCGALVVLTPFIWMISTASKPPAEIYTSDVHLIPHHFALWDNLQEAFAKSNLGRFLLNGLIV
TVSIFALQVLVALPAAYALAKLRFVGRKTLFALVLFGILIPPQATAIPVFLLLHQIGALDSYAALVLPFTISVFGIFLMR
QFFMTVPDDLIDAARMDGISEFGIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSEQLRTPPLAVAHFRNAEAG
TNYGPLMAAALVIITPLVVAFLLAQRRFIEGITMTGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=276, Percent_Identity=28.6231884057971, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787571, Length=286, Percent_Identity=27.972027972028, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790464, Length=199, Percent_Identity=24.6231155778894, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30601; Mature: 30601

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]