| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86747175
Identifier: 86747175
GI number: 86747175
Start: 48751
End: 50181
Strand: Reverse
Name: 86747175
Synonym: RPB_0048
Alternate gene names: NA
Gene position: 50181-48751 (Counterclockwise)
Preceding gene: 86747177
Following gene: 86747169
Centisome position: 0.94
GC content: 71.84
Gene sequence:
>1431_bases ATGACAATTTCCCGACGCCGCTTTCTCGGAGCCACCGCCGGCCTGGCCGTCGCGCCGATGTTCGGGGGCCGCGCATCGGC GGCGCTGCCGCGCGAGGTCGATGTCGTCGTGGTCGGCGCCGGCGCTGCCGGCATCGCGGCGGCCCGGCGGATCGCCGCGA GCGGCCGCAAGGTGATCGTGGTCGAGGCTGCGGCGCAAATCGGCGGCCGCTGCCAGACCGACACCACCAGCTTCGACGCA CCGTTCGATCGCGGCGCGCGGTTCCTGCACAATCCGGACAGCAATCCGCTGGTGCGGCTGGCGCGCAGCGAAGGCTTCGA GATCGCGCCGGCGGCGCCCGGGCAGAAAGTCCGGATCGGCCGCCGCAACGCGCGGGCGCGCGAGACCGAGGACCTGCTCG CCACCATGGTGCGGGCCAGCCGGGCGCTCGGCGACGCCGCCCGCGGCCGGGCCGACGTGTCCTGCGCCGCGGCGCTGCCG AACGATCTCGGCGACTGGACGGCGACGGTCGAATTCGTGCTCGGCCCAGTCGCCACCGGCAAGGACCTGAAAGACCTCTC GGCGATCGACGGCTTTCGCGCGCAGGATCGCAACGCCATCATCGGCGTGCGGCAGGGATTGGGCGGGCTCCTGGCCCGGC TTGCAGCGGCGCTGCCGGTGACACTGTCGACGCCGGTGACGCGGATCGTCTGGAGTGGCCGCGACATCGGCGTGGAGACC GCATCGGGCAAGATCGCGGCGCGCGCGATCATTCTCACCGCCTCGACCAATGTGCTGAGTTCGGGCGCGATCGCGTTTTC GCCGGAGTTGCCGAAGCGCCAGCTCGATGCCGCCGGCAAGCTCGGGCTCGGCAGCTACGATCGGATCGCGCTGTCTTTCA AGGGCAACCCGCTCGGCCTGTCGCGCGACGAGATGATGATCGAGCGAAGTGACAGCGCCCGCACCGCGGTGCTGAGTGCC AATGTCAACGGCTCGTCGCTGTGCACGGTCGATGTCGCCGGCGCCTTCGGCCGCGATCTGTCGGCGCAGGGCGAAGCGGC GATGCAGGCGTTCGCGGTCGAATGGTTGAGCAAGCTATTCGGCAGCGACATCGCCGCAGCGATCGACCGCAAGGCGGCGA CGCGCTGGAACGCGGCGCCTTATGTGCAGGGCGCGATGTCGGCGGCGGCGCCCGGCGGCGCGGCGTCGCGCAAGGTGCTG GCCGAGCCGCTCGGCAATCTGTTCATCGCCGGCGAAGCCACCAGCGATCTGATGTGGGGCACCGTGCTGGGCGCATGGGA GAGCGGCGAGACCGCCGCCGACGCCGCGCTGAAGCGGATCGGCCCGGCAAAGCCCGCCGCCGCCGCGGAGAAGCCGCAGC GCAAGCCGAAGCCGCGTCGCCGCAATCAGGAAGCCACCGGCTCCGCCGATCGCTGGCCGGGCAGCCGTTGA
Upstream 100 bases:
>100_bases GCCGTTTGGGGTTAGACTGACGATCGCGCCCCGGCGCAGGACAAGGCCGGGTTGTGCCGCTTCGCAGCGGCCCGGCACAG ACATTTTCGGAAACCATGAC
Downstream 100 bases:
>100_bases TTACAAGCACGACGTCATCCTGAGGTGCCCGTTTGTCCGCGCGCAGCGCGGGCGAACGGGCCTCGAAGGATGGCCGCAGG CACCCGTTGCGCATCCTTCG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Amine Oxidase Protein; FAD Dependent Oxidoreductase; Amine Oxidase Family Protein; Monoamine Oxidase; Amine Oxidoreductase Domain-Containing Protein; Flavin Containing Amine Oxidoreductase
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MTISRRRFLGATAGLAVAPMFGGRASAALPREVDVVVVGAGAAGIAAARRIAASGRKVIVVEAAAQIGGRCQTDTTSFDA PFDRGARFLHNPDSNPLVRLARSEGFEIAPAAPGQKVRIGRRNARARETEDLLATMVRASRALGDAARGRADVSCAAALP NDLGDWTATVEFVLGPVATGKDLKDLSAIDGFRAQDRNAIIGVRQGLGGLLARLAAALPVTLSTPVTRIVWSGRDIGVET ASGKIAARAIILTASTNVLSSGAIAFSPELPKRQLDAAGKLGLGSYDRIALSFKGNPLGLSRDEMMIERSDSARTAVLSA NVNGSSLCTVDVAGAFGRDLSAQGEAAMQAFAVEWLSKLFGSDIAAAIDRKAATRWNAAPYVQGAMSAAAPGGAASRKVL AEPLGNLFIAGEATSDLMWGTVLGAWESGETAADAALKRIGPAKPAAAAEKPQRKPKPRRRNQEATGSADRWPGSR
Sequences:
>Translated_476_residues MTISRRRFLGATAGLAVAPMFGGRASAALPREVDVVVVGAGAAGIAAARRIAASGRKVIVVEAAAQIGGRCQTDTTSFDA PFDRGARFLHNPDSNPLVRLARSEGFEIAPAAPGQKVRIGRRNARARETEDLLATMVRASRALGDAARGRADVSCAAALP NDLGDWTATVEFVLGPVATGKDLKDLSAIDGFRAQDRNAIIGVRQGLGGLLARLAAALPVTLSTPVTRIVWSGRDIGVET ASGKIAARAIILTASTNVLSSGAIAFSPELPKRQLDAAGKLGLGSYDRIALSFKGNPLGLSRDEMMIERSDSARTAVLSA NVNGSSLCTVDVAGAFGRDLSAQGEAAMQAFAVEWLSKLFGSDIAAAIDRKAATRWNAAPYVQGAMSAAAPGGAASRKVL AEPLGNLFIAGEATSDLMWGTVLGAWESGETAADAALKRIGPAKPAAAAEKPQRKPKPRRRNQEATGSADRWPGSR >Mature_475_residues TISRRRFLGATAGLAVAPMFGGRASAALPREVDVVVVGAGAAGIAAARRIAASGRKVIVVEAAAQIGGRCQTDTTSFDAP FDRGARFLHNPDSNPLVRLARSEGFEIAPAAPGQKVRIGRRNARARETEDLLATMVRASRALGDAARGRADVSCAAALPN DLGDWTATVEFVLGPVATGKDLKDLSAIDGFRAQDRNAIIGVRQGLGGLLARLAAALPVTLSTPVTRIVWSGRDIGVETA SGKIAARAIILTASTNVLSSGAIAFSPELPKRQLDAAGKLGLGSYDRIALSFKGNPLGLSRDEMMIERSDSARTAVLSAN VNGSSLCTVDVAGAFGRDLSAQGEAAMQAFAVEWLSKLFGSDIAAAIDRKAATRWNAAPYVQGAMSAAAPGGAASRKVLA EPLGNLFIAGEATSDLMWGTVLGAWESGETAADAALKRIGPAKPAAAAEKPQRKPKPRRRNQEATGSADRWPGSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49266; Mature: 49134
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISRRRFLGATAGLAVAPMFGGRASAALPREVDVVVVGAGAAGIAAARRIAASGRKVIV CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEE VEAAAQIGGRCQTDTTSFDAPFDRGARFLHNPDSNPLVRLARSEGFEIAPAAPGQKVRIG EEEHHHHCCCCCCCCCCCCCCHHHCCHHHCCCCCCCEEEEECCCCCEECCCCCCCEEEEC RRNARARETEDLLATMVRASRALGDAARGRADVSCAAALPNDLGDWTATVEFVLGPVATG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHEEHHHHCCCCCC KDLKDLSAIDGFRAQDRNAIIGVRQGLGGLLARLAAALPVTLSTPVTRIVWSGRDIGVET CCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCEEE ASGKIAARAIILTASTNVLSSGAIAFSPELPKRQLDAAGKLGLGSYDRIALSFKGNPLGL CCCCEEEEEEEEEECCCHHCCCCEEECCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCC SRDEMMIERSDSARTAVLSANVNGSSLCTVDVAGAFGRDLSAQGEAAMQAFAVEWLSKLF CHHHHHEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH GSDIAAAIDRKAATRWNAAPYVQGAMSAAAPGGAASRKVLAEPLGNLFIAGEATSDLMWG CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHH TVLGAWESGETAADAALKRIGPAKPAAAAEKPQRKPKPRRRNQEATGSADRWPGSR HHEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TISRRRFLGATAGLAVAPMFGGRASAALPREVDVVVVGAGAAGIAAARRIAASGRKVIV CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEE VEAAAQIGGRCQTDTTSFDAPFDRGARFLHNPDSNPLVRLARSEGFEIAPAAPGQKVRIG EEEHHHHCCCCCCCCCCCCCCHHHCCHHHCCCCCCCEEEEECCCCCEECCCCCCCEEEEC RRNARARETEDLLATMVRASRALGDAARGRADVSCAAALPNDLGDWTATVEFVLGPVATG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCHHHEEHHHHCCCCCC KDLKDLSAIDGFRAQDRNAIIGVRQGLGGLLARLAAALPVTLSTPVTRIVWSGRDIGVET CCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCEEE ASGKIAARAIILTASTNVLSSGAIAFSPELPKRQLDAAGKLGLGSYDRIALSFKGNPLGL CCCCEEEEEEEEEECCCHHCCCCEEECCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCC SRDEMMIERSDSARTAVLSANVNGSSLCTVDVAGAFGRDLSAQGEAAMQAFAVEWLSKLF CHHHHHEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH GSDIAAAIDRKAATRWNAAPYVQGAMSAAAPGGAASRKVLAEPLGNLFIAGEATSDLMWG CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHH TVLGAWESGETAADAALKRIGPAKPAAAAEKPQRKPKPRRRNQEATGSADRWPGSR HHEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA