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The map label for this gene is fliR [H]

Identifier: 162138518

GI number: 162138518

Start: 4309284

End: 4310051

Strand: Reverse

Name: fliR [H]

Synonym: RPB_3773

Alternate gene names: 162138518

Gene position: 4310051-4309284 (Counterclockwise)

Preceding gene: 86750883

Following gene: 86750881

Centisome position: 80.84

GC content: 63.8

Gene sequence:

>768_bases
ATGCGCATCGACATCTCGTTCCTGCCCGCGCTCGGCGCCGCCTTCATGCTGGTGTTCGCCCGCGTCGGCGCGATGGTGAT
GCTGTTGCCGACGCTCGGCGAGAGCAACATCCCGACGCGGATCAAGCTGTCGATCGCACTCGGCCTGACGCTGATCATCC
TGCCATTGCACCGCAATGCCTATCAGGTCGACATGTCGTCGCTGACGCCGCTGCTGGTGCTGATGATTCAGGAAATCATC
ATCGGCATCGTGCTCGGCGCCACCGCGCGGGTGACGCTGTCGGCGCTGCAGGTCGCAGGTTCGGTGATCGCACAGCAACT
CGGGCTCGGCTTCGTCACGGCGGTCGATCCGACCCAGGGGCAGCAGGGGCTGCTGATCGGCAATTTCCTCACCATCCTCG
GCGTGACGATGCTGTTCGCCACGGACTCGCATCATCTGGTGATCGAGGCGCTCAGCGACAGCTACAAGATCTTCGCGCCC
GGCGAATTGCTGAACAGCGGCGACGTCGCCGCGCTCGCCACCAAGGCGTTCGCCGCCTCGTTCAAGATCGGCATGCAGCT
CGCCGCGCCGTTCCTGGTGTTCGGCCTGGTGTTCAACATCGGCCTCGGCATCCTGGCGCGGCTGATGCCGCAGATGCAGG
TGTATTTCGTCGGCGTGCCGCTCTCGATCATGATCGGGTTCGTCATCTTCGCCGCCGTGCTGACGACGATGATGGGCACG
TTTCTCGCCTATTTCGGCGGCGTCATGCAGGAATTGACGCCTCGCTGA

Upstream 100 bases:

>100_bases
CGCATGATCGGAGCCCGTGCCACCGGCCGGTGCGTGGGGGGCGTGGCGGTTCGCCGCGACGCCGGCGCGGCCACATCCGG
TCCTGACGCAGTTTCTCGCC

Downstream 100 bases:

>100_bases
GCCCGATCGCGCAGGATAGCTGAGCGATGTCGGACGACAGCGACCAGGAGAAACAAGAGGAGCCGACACAGAAACGCCTC
GACGACGCGCTCGAGAAAGG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLVLMIQEII
IGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAP
GELLNSGDVAALATKAFAASFKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT
FLAYFGGVMQELTPR

Sequences:

>Translated_255_residues
MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLVLMIQEII
IGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAP
GELLNSGDVAALATKAFAASFKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT
FLAYFGGVMQELTPR
>Mature_255_residues
MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNAYQVDMSSLTPLLVLMIQEII
IGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQGQQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAP
GELLNSGDVAALATKAFAASFKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT
FLAYFGGVMQELTPR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=215, Percent_Identity=33.953488372093, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27072; Mature: 27072

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNA
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHEEECCCCC
YQVDMSSLTPLLVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQG
EEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
QQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAAS
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHHHH
FKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
FLAYFGGVMQELTPR
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIDISFLPALGAAFMLVFARVGAMVMLLPTLGESNIPTRIKLSIALGLTLIILPLHRNA
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHEEECCCCC
YQVDMSSLTPLLVLMIQEIIIGIVLGATARVTLSALQVAGSVIAQQLGLGFVTAVDPTQG
EEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
QQGLLIGNFLTILGVTMLFATDSHHLVIEALSDSYKIFAPGELLNSGDVAALATKAFAAS
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHHHH
FKIGMQLAAPFLVFGLVFNIGLGILARLMPQMQVYFVGVPLSIMIGFVIFAAVLTTMMGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
FLAYFGGVMQELTPR
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]