Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86609139
Identifier: 86609139
GI number: 86609139
Start: 1755423
End: 1756076
Strand: Reverse
Name: 86609139
Synonym: CYB_1679
Alternate gene names: NA
Gene position: 1756076-1755423 (Counterclockwise)
Preceding gene: 86609140
Following gene: 86609138
Centisome position: 57.64
GC content: 61.31
Gene sequence:
>654_bases ATGGTGGATCGTCTGGGTGCAGCCTCAGCTCGCCTTTGGTTTTTCGACCCGCAGGAAGGATGTTTTCAGTCGGTGGCCCA TGCCGGCCTGCTCAGTCCTGCTCACGACCAAATTCAGCGGATCTACCCTGACGACAGCCCTTTGGGACGGGTGGCCCAGG AGGGGCTGCCGCTTTTGAGCAACAATCCCGCCCAAGAAGCCTGGATGCCCGCCCCGGAGTGGGTGAAGGCCAATGGCTTG CGAGGCTTTGTTGCCTACCCGATTAACCGGGGGGAGGAGCGGCTGGGGGCTTTGGCTCTGCTGAGCCGGACACCTCTGGA AGCCAGCTTTCTGATTGTCAAACACGCGGGGGCACGGCGCATCGATCTCATCATTCAGCCCAAGGTTCAACAGGACGCCG GTTCCTCTATCAACCCTCAGGCTCCCTACACCCACTTGGAGCTGAAGATCATCGACGATGTCTGCGGTATGCCGGCGTCC AAGAGTGGGGTGGATCCCGCCCAGCCGTCTGGCCATGGACACGGGTTGCTCAACATGCGCTACCGAGCCGAGTTGATCGG GGCAAGCATTGCTTGGCGTAATCGCCGCTTTGGCAGTGGCACAGTTGTAGAGCTGCGAGTCCCTCTGCCGCCGAGTCCCC GATCTTGCGGCTAG
Upstream 100 bases:
>100_bases GCTCTCTTCTCAGTTATCTTCCCCATCCTCTTCGGACTCTGTAGAGATGGGGGAGCTGGAGCAGTGTGTGCTCAAGCTGG CCCAGACCTTGGTACGGCAG
Downstream 100 bases:
>100_bases CCCCCCCTTTTCTGAGGTAGCAGACGCAGCATTTTCAGTCTCAACCTGTTCTATAGTCATTTAAGCTCAAGGGTTCCCGG TTCTCTAACCTGTCTGGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MVDRLGAASARLWFFDPQEGCFQSVAHAGLLSPAHDQIQRIYPDDSPLGRVAQEGLPLLSNNPAQEAWMPAPEWVKANGL RGFVAYPINRGEERLGALALLSRTPLEASFLIVKHAGARRIDLIIQPKVQQDAGSSINPQAPYTHLELKIIDDVCGMPAS KSGVDPAQPSGHGHGLLNMRYRAELIGASIAWRNRRFGSGTVVELRVPLPPSPRSCG
Sequences:
>Translated_217_residues MVDRLGAASARLWFFDPQEGCFQSVAHAGLLSPAHDQIQRIYPDDSPLGRVAQEGLPLLSNNPAQEAWMPAPEWVKANGL RGFVAYPINRGEERLGALALLSRTPLEASFLIVKHAGARRIDLIIQPKVQQDAGSSINPQAPYTHLELKIIDDVCGMPAS KSGVDPAQPSGHGHGLLNMRYRAELIGASIAWRNRRFGSGTVVELRVPLPPSPRSCG >Mature_217_residues MVDRLGAASARLWFFDPQEGCFQSVAHAGLLSPAHDQIQRIYPDDSPLGRVAQEGLPLLSNNPAQEAWMPAPEWVKANGL RGFVAYPINRGEERLGALALLSRTPLEASFLIVKHAGARRIDLIIQPKVQQDAGSSINPQAPYTHLELKIIDDVCGMPAS KSGVDPAQPSGHGHGLLNMRYRAELIGASIAWRNRRFGSGTVVELRVPLPPSPRSCG
Specific function: Unknown
COG id: COG2203
COG function: function code T; FOG: GAF domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23538; Mature: 23538
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDRLGAASARLWFFDPQEGCFQSVAHAGLLSPAHDQIQRIYPDDSPLGRVAQEGLPLLS CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCC NNPAQEAWMPAPEWVKANGLRGFVAYPINRGEERLGALALLSRTPLEASFLIVKHAGARR CCCCHHHCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEE IDLIIQPKVQQDAGSSINPQAPYTHLELKIIDDVCGMPASKSGVDPAQPSGHGHGLLNMR EEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEE YRAELIGASIAWRNRRFGSGTVVELRVPLPPSPRSCG EEHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MVDRLGAASARLWFFDPQEGCFQSVAHAGLLSPAHDQIQRIYPDDSPLGRVAQEGLPLLS CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCC NNPAQEAWMPAPEWVKANGLRGFVAYPINRGEERLGALALLSRTPLEASFLIVKHAGARR CCCCHHHCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCEE IDLIIQPKVQQDAGSSINPQAPYTHLELKIIDDVCGMPASKSGVDPAQPSGHGHGLLNMR EEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEE YRAELIGASIAWRNRRFGSGTVVELRVPLPPSPRSCG EEHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA