Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
---|---|
Accession | NC_007776 |
Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is gltX [H]
Identifier: 86609140
GI number: 86609140
Start: 1756309
End: 1757748
Strand: Reverse
Name: gltX [H]
Synonym: CYB_1680
Alternate gene names: 86609140
Gene position: 1757748-1756309 (Counterclockwise)
Preceding gene: 86609141
Following gene: 86609139
Centisome position: 57.69
GC content: 60.35
Gene sequence:
>1440_bases GTGAGTGTTTGTGTTCGCATTGCCCCCAGCCCAACCGGAAATCTGCACATCGGCACTGCCCGAACGGCAGTGTTCAACTG GCTGTATGCCCGTCGCCACGGTGGCCGGTTCATTTTGCGCATCGAGGACACCGACCGCGACCGCTCTTTGCCCCGCTACA CCCGCAACATTTTGGCGGGCCTGGCCTGGTTGGGCCTAGACTGGGACGAAGGGCCGGTCTACCAATCCAAGCGCATCGAG CGCTATCAAGCGGTGGTACAGCAGCTTCTGGATCGAGGGTTGGCCTACCGCTGCTACGTCAGCGAGGCGGAGCTGGAGGA GATGCGCGCTGCCCAGAAGGCCGCCGGCAAAGCCCCCCGCTACGACAACCGCCACCGCTTTCTCACCGAAGCCCAGCGAC GGGCCTACGAAGCCGAGGGTCGGCAGCCGGTGATCCGCTTCAAAATCGAGGAGCCCCTGGAAGTGTCTTGGGTGGATCTC ATTCGCGGCCCCATTACCTGGAACACCCAGGACTTGGGGGGGGATATGGTCATTGCCCGGGCGGATGGCTGCCCTCTCTA CAACTTGGCGGTGGTGGTGGATGACATCGACATGGGCATCACCCATGTGATTCGCGGCGAAGATCACATCGGCAATACCC CCAAGCAGATTTTGCTCTACCGTGCTCTTGGCCACGAACCTCCCCAGTTTGCCCATTCTCCGCTAATCCTGAACCCGGAG GGGAAAAAGCTCTCCAAACGGGATGGGGCAACTTCGGTAGCAGAGTTCCAGCAACTGGGCTTTTTGCCGGAAGCTCTCAA GAACTATTTGGCTTTGCTCAGTTGGTCGCCCCCGGATGGGGAAGAGCTTTTCTCTTTGGAAAAGGCGGCTGCGCTGTTCG ACTTTGACCGGGTTAACCGTGCGGCTGCCCGCTTTGACTGGGACAAGCTCAACTGGATCAACAGCCAGTACATCAAGCGG CTTTCTCCGCCAGAACTGGTAGAACGGCTCACCCCCTTTTGGCAGGCGGCAGGGTTTGACCTTTCCGAGGTGCCGGATCC CACCTGGTTGGAAGATGTGGCCCGCCTGATTGCCGATGGTATCGACCGCCTGGCAGAAGCTCCTCCGCTCAGCCGCTTTT TGTTTCAGGAGCCCCTCAGCTACACGTTGCCAGCTCTGGAACAGTTGCGCCTGCCTGGGGTGGCAGAGGCTATGGCTGCA ATGGCCACCACGTTGGCTGCTGCCGAGCTGCCCCAGGTTTCGGCGGACAGCTTAAAACCGCTGGTGGATCAGGTGGCCAA GGGCCAGAACATGAAAAAGGGCCTGCTGATGAAGAGTTTGCGGGCCGCCCTGACAGGGGATCTGCAGGGGCCGGATTTGC TGGAATCTTTTGCCCTTCTCCAGCGGCGGGGCTGGGCTTTGGGGCGGTTAGAGGCTGTGCAGAAGTTGGTTCCTTGTTGA
Upstream 100 bases:
>100_bases CCTCAATTGGCAACCGCCTGCAACCCAATGGAGGGCCAATATGACAAAGGATCTCGCCGCCGACTAGGATCAGGATGCTC TGCTTGGGATCCTTAGACCT
Downstream 100 bases:
>100_bases TGGAAGCCCATCTCTTGCTGTCATGCCTTCGGTTGCCTCTGTTGAAAGTGCTCCGCACCGCTGCCGCAATCGGGATCCCA TGCTGTCACGCCAGCTACAG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MSVCVRIAPSPTGNLHIGTARTAVFNWLYARRHGGRFILRIEDTDRDRSLPRYTRNILAGLAWLGLDWDEGPVYQSKRIE RYQAVVQQLLDRGLAYRCYVSEAELEEMRAAQKAAGKAPRYDNRHRFLTEAQRRAYEAEGRQPVIRFKIEEPLEVSWVDL IRGPITWNTQDLGGDMVIARADGCPLYNLAVVVDDIDMGITHVIRGEDHIGNTPKQILLYRALGHEPPQFAHSPLILNPE GKKLSKRDGATSVAEFQQLGFLPEALKNYLALLSWSPPDGEELFSLEKAAALFDFDRVNRAAARFDWDKLNWINSQYIKR LSPPELVERLTPFWQAAGFDLSEVPDPTWLEDVARLIADGIDRLAEAPPLSRFLFQEPLSYTLPALEQLRLPGVAEAMAA MATTLAAAELPQVSADSLKPLVDQVAKGQNMKKGLLMKSLRAALTGDLQGPDLLESFALLQRRGWALGRLEAVQKLVPC
Sequences:
>Translated_479_residues MSVCVRIAPSPTGNLHIGTARTAVFNWLYARRHGGRFILRIEDTDRDRSLPRYTRNILAGLAWLGLDWDEGPVYQSKRIE RYQAVVQQLLDRGLAYRCYVSEAELEEMRAAQKAAGKAPRYDNRHRFLTEAQRRAYEAEGRQPVIRFKIEEPLEVSWVDL IRGPITWNTQDLGGDMVIARADGCPLYNLAVVVDDIDMGITHVIRGEDHIGNTPKQILLYRALGHEPPQFAHSPLILNPE GKKLSKRDGATSVAEFQQLGFLPEALKNYLALLSWSPPDGEELFSLEKAAALFDFDRVNRAAARFDWDKLNWINSQYIKR LSPPELVERLTPFWQAAGFDLSEVPDPTWLEDVARLIADGIDRLAEAPPLSRFLFQEPLSYTLPALEQLRLPGVAEAMAA MATTLAAAELPQVSADSLKPLVDQVAKGQNMKKGLLMKSLRAALTGDLQGPDLLESFALLQRRGWALGRLEAVQKLVPC >Mature_478_residues SVCVRIAPSPTGNLHIGTARTAVFNWLYARRHGGRFILRIEDTDRDRSLPRYTRNILAGLAWLGLDWDEGPVYQSKRIER YQAVVQQLLDRGLAYRCYVSEAELEEMRAAQKAAGKAPRYDNRHRFLTEAQRRAYEAEGRQPVIRFKIEEPLEVSWVDLI RGPITWNTQDLGGDMVIARADGCPLYNLAVVVDDIDMGITHVIRGEDHIGNTPKQILLYRALGHEPPQFAHSPLILNPEG KKLSKRDGATSVAEFQQLGFLPEALKNYLALLSWSPPDGEELFSLEKAAALFDFDRVNRAAARFDWDKLNWINSQYIKRL SPPELVERLTPFWQAAGFDLSEVPDPTWLEDVARLIADGIDRLAEAPPLSRFLFQEPLSYTLPALEQLRLPGVAEAMAAM ATTLAAAELPQVSADSLKPLVDQVAKGQNMKKGLLMKSLRAALTGDLQGPDLLESFALLQRRGWALGRLEAVQKLVPC
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=479, Percent_Identity=35.6993736951983, Blast_Score=253, Evalue=4e-67, Organism=Escherichia coli, GI1788743, Length=453, Percent_Identity=41.280353200883, Blast_Score=344, Evalue=6e-96, Organism=Escherichia coli, GI226510925, Length=248, Percent_Identity=35.8870967741936, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1786895, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71993394, Length=474, Percent_Identity=32.7004219409283, Blast_Score=215, Evalue=3e-56, Organism=Saccharomyces cerevisiae, GI6324540, Length=466, Percent_Identity=32.618025751073, Blast_Score=235, Evalue=1e-62, Organism=Saccharomyces cerevisiae, GI6321192, Length=207, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6324742, Length=126, Percent_Identity=30.1587301587302, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665321, Length=487, Percent_Identity=35.523613963039, Blast_Score=270, Evalue=1e-72,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 53767; Mature: 53636
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVCVRIAPSPTGNLHIGTARTAVFNWLYARRHGGRFILRIEDTDRDRSLPRYTRNILAG CCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH LAWLGLDWDEGPVYQSKRIERYQAVVQQLLDRGLAYRCYVSEAELEEMRAAQKAAGKAPR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCC YDNRHRFLTEAQRRAYEAEGRQPVIRFKIEEPLEVSWVDLIRGPITWNTQDLGGDMVIAR CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEE ADGCPLYNLAVVVDDIDMGITHVIRGEDHIGNTPKQILLYRALGHEPPQFAHSPLILNPE CCCCCEEEEEEEEECCCCCHHHEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCC GKKLSKRDGATSVAEFQQLGFLPEALKNYLALLSWSPPDGEELFSLEKAAALFDFDRVNR CCCCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH AAARFDWDKLNWINSQYIKRLSPPELVERLTPFWQAAGFDLSEVPDPTWLEDVARLIADG HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH IDRLAEAPPLSRFLFQEPLSYTLPALEQLRLPGVAEAMAAMATTLAAAELPQVSADSLKP HHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH LVDQVAKGQNMKKGLLMKSLRAALTGDLQGPDLLESFALLQRRGWALGRLEAVQKLVPC HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure SVCVRIAPSPTGNLHIGTARTAVFNWLYARRHGGRFILRIEDTDRDRSLPRYTRNILAG CEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH LAWLGLDWDEGPVYQSKRIERYQAVVQQLLDRGLAYRCYVSEAELEEMRAAQKAAGKAPR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCC YDNRHRFLTEAQRRAYEAEGRQPVIRFKIEEPLEVSWVDLIRGPITWNTQDLGGDMVIAR CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEE ADGCPLYNLAVVVDDIDMGITHVIRGEDHIGNTPKQILLYRALGHEPPQFAHSPLILNPE CCCCCEEEEEEEEECCCCCHHHEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCC GKKLSKRDGATSVAEFQQLGFLPEALKNYLALLSWSPPDGEELFSLEKAAALFDFDRVNR CCCCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH AAARFDWDKLNWINSQYIKRLSPPELVERLTPFWQAAGFDLSEVPDPTWLEDVARLIADG HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH IDRLAEAPPLSRFLFQEPLSYTLPALEQLRLPGVAEAMAAMATTLAAAELPQVSADSLKP HHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH LVDQVAKGQNMKKGLLMKSLRAALTGDLQGPDLLESFALLQRRGWALGRLEAVQKLVPC HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA