Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86609041
Identifier: 86609041
GI number: 86609041
Start: 1649446
End: 1651422
Strand: Reverse
Name: 86609041
Synonym: CYB_1576
Alternate gene names: NA
Gene position: 1651422-1649446 (Counterclockwise)
Preceding gene: 86609057
Following gene: 86609040
Centisome position: 54.2
GC content: 64.09
Gene sequence:
>1977_bases ATGCGGTGGCAATGGCTGGTTGTGCTGAGTGGTGTGCTGGGGCTGGGATCCCCTGTGTTGGGGCAAGGGATCCCTTCGCC GGAGGCAGGCTCTTCCTCTGCTGGGAGGAACTTTTCTGCGGATGGGAACGGCCTGAGGACAGAGGGGGATTGGCTTTTGC CGTTGCGCAGCTCTGCCGATCGCATCGATGGGGTACCGGATCGGGGCTGGGTTGCGGTTGGGCTGTTGGAGGAGCAGGCC GTGACTCTGCTGGATGGGGCCAGCGGGGATCCCTTGTGGCAGGCGGCGGTGGGGTTTGCCCCCAGTGTGGTGCGGGTGGA TGAGGCGCGGCAGGTGGTCTATGCCTCTGGCCCCAATGCCCCTGGGCTGGTGGCCCTCGATCTGCTGACGGGGGAGCTGA TTCAGGCTTATGGGTTGCCGGCAGGGGTTTTGGATATTGCCGTGGATGGGGTCACAGGGCGGGTTTTCGCCTCCATGCCT TCTGCCCAAAGTCTGGCGGTGATGGCTGCTCCCCTGCGCGTCAGCGGTGCGCAAAGCGATCCCTCAGAGCAGCCGCAAGC CCGCAATTTGCCGATGCCCGGCCCCCCCTTGGCGCTGGCCTATGATGCGCAGCGGGGATCCCTGTTTGTGGGTCTAGCCG GGGAGGATCCCCTCAGTTTGCTGGTGGTCAACCCAGACAATGGGGAGTTGTTGGCCCGTTGGCGCGGCGGCAATACTCCG GAAGCGATGGCTTTGGATGCCGAACGGCAACGCTTGGTGGTGCTCAACTCCGGCAGCCAAGATCTAACAGTGCTGGATCT GAGCCGCAGCGGCGAGGCCCTGCAGCGGGTTGGCCTGGATTGGCGACCGACGCGGCTGGCCCTTTCCCCTGATGGACGTT GGGCTTACGTGACCTCCCGCGATAGCGACCGCCTGCAGCTGGTGGATTTACAGACGGGGCGATTGGTGGCCTCGCTGCGG CTGCAGGGACAGCCGACGGGTCTGGTGATGCTGGGGGAGCGGGATCTGTGGGTGGTGGCAGCAGGGATCCCGGCTTTGCG CCGTTTGCAGGATATTCAGGCTCAAGTTGGCGACGGCGGGACAGAGGTCCTGAACGGGGGAGTCCCCTCTCCAGGCAACC GCGGTGTGGTAACCGGGCGGGTGCTGGATATTGCCGGCCAACCCGTTCAGACCGGGGTTTTGCACTTGGCCGCCACGCCA ACCCAACCCAGGCAAACCGTCCGCATTGCTGCCGACGGCACTTACGTGCTGCCGGAACTGTCGGCCGGCCTGTATTTGGT GGATGTGGAGGTGCCGGGTTTTCCGCTGACCAGCACCCAGGTGGAAGTCCGGGCCGGCTTTGTCTCCACTCAGGATATTC GTCTGCCGCCCGGGGAACCGACCCGCCGGCCGGAGGGCATTGGCCTTTTGCCGGATGAACCCGTTTACTCGGATGAGCTG GCCCGCCACCTCAGCATGGCCCTGAAGGAGTTGCAGCCCCAGCGACCGGTGATCCTCTTGAAGGGGCCTTTGGGGCCGGA TCCTCGGTTTGAGCCGCTTCTGCCCCTCACCCAGGGCCTAACGTTGTTGGATCGGGATGAGCGCTACACCGCCGACTTGG CCAAGCTGAAGGCCATCGGGGATGCCCTGGGATTGCGCTATATCCTCTTGACCCAGATGCAGATCTCGCGGGACTACAAC CGCCAGGGCAACTCTCTGCTGAATACGGCCTTACGCTTTGTGGCCCCGACGGTGCCGGTGGAAATTCCCAATTTCACCCC CAACCAGTTGCGCAGCCGCGGGGTGGTGGTGGTGGTGGACTTGCAGAGGGATCGGCCTGGGGATCGGGCCCGCTACTACG AAGCCTATGGGCGGGATGATGTGGGCGGGGATCCGATGTTTGAAGATGCGGCAGCGGGCCTGTTTCGGCTGCAGGTGCGC AACATGGTGCCGGTGTTTGTCCAACAATGGCAAACCAACAACCCCTTTTCGGGGTGA
Upstream 100 bases:
>100_bases TTTGGGTTTGCTGACAGCGAGCGGACAGTCGGGTTGGCTATGCTGGTTGGGCGAGGATCTCCTGAGTCAAAGTAGGCGCG ACTGTGGGGTGGAGAAGGCC
Downstream 100 bases:
>100_bases GGATCCCTGCAGCAGGATCTTGCCCTGTTCGCGTCAGGGGTGCGGAGCAGAATAGAACCGACTGCTACTACCGGATGCAA CCTTCGCCATGCCTTTTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MRWQWLVVLSGVLGLGSPVLGQGIPSPEAGSSSAGRNFSADGNGLRTEGDWLLPLRSSADRIDGVPDRGWVAVGLLEEQA VTLLDGASGDPLWQAAVGFAPSVVRVDEARQVVYASGPNAPGLVALDLLTGELIQAYGLPAGVLDIAVDGVTGRVFASMP SAQSLAVMAAPLRVSGAQSDPSEQPQARNLPMPGPPLALAYDAQRGSLFVGLAGEDPLSLLVVNPDNGELLARWRGGNTP EAMALDAERQRLVVLNSGSQDLTVLDLSRSGEALQRVGLDWRPTRLALSPDGRWAYVTSRDSDRLQLVDLQTGRLVASLR LQGQPTGLVMLGERDLWVVAAGIPALRRLQDIQAQVGDGGTEVLNGGVPSPGNRGVVTGRVLDIAGQPVQTGVLHLAATP TQPRQTVRIAADGTYVLPELSAGLYLVDVEVPGFPLTSTQVEVRAGFVSTQDIRLPPGEPTRRPEGIGLLPDEPVYSDEL ARHLSMALKELQPQRPVILLKGPLGPDPRFEPLLPLTQGLTLLDRDERYTADLAKLKAIGDALGLRYILLTQMQISRDYN RQGNSLLNTALRFVAPTVPVEIPNFTPNQLRSRGVVVVVDLQRDRPGDRARYYEAYGRDDVGGDPMFEDAAAGLFRLQVR NMVPVFVQQWQTNNPFSG
Sequences:
>Translated_658_residues MRWQWLVVLSGVLGLGSPVLGQGIPSPEAGSSSAGRNFSADGNGLRTEGDWLLPLRSSADRIDGVPDRGWVAVGLLEEQA VTLLDGASGDPLWQAAVGFAPSVVRVDEARQVVYASGPNAPGLVALDLLTGELIQAYGLPAGVLDIAVDGVTGRVFASMP SAQSLAVMAAPLRVSGAQSDPSEQPQARNLPMPGPPLALAYDAQRGSLFVGLAGEDPLSLLVVNPDNGELLARWRGGNTP EAMALDAERQRLVVLNSGSQDLTVLDLSRSGEALQRVGLDWRPTRLALSPDGRWAYVTSRDSDRLQLVDLQTGRLVASLR LQGQPTGLVMLGERDLWVVAAGIPALRRLQDIQAQVGDGGTEVLNGGVPSPGNRGVVTGRVLDIAGQPVQTGVLHLAATP TQPRQTVRIAADGTYVLPELSAGLYLVDVEVPGFPLTSTQVEVRAGFVSTQDIRLPPGEPTRRPEGIGLLPDEPVYSDEL ARHLSMALKELQPQRPVILLKGPLGPDPRFEPLLPLTQGLTLLDRDERYTADLAKLKAIGDALGLRYILLTQMQISRDYN RQGNSLLNTALRFVAPTVPVEIPNFTPNQLRSRGVVVVVDLQRDRPGDRARYYEAYGRDDVGGDPMFEDAAAGLFRLQVR NMVPVFVQQWQTNNPFSG >Mature_658_residues MRWQWLVVLSGVLGLGSPVLGQGIPSPEAGSSSAGRNFSADGNGLRTEGDWLLPLRSSADRIDGVPDRGWVAVGLLEEQA VTLLDGASGDPLWQAAVGFAPSVVRVDEARQVVYASGPNAPGLVALDLLTGELIQAYGLPAGVLDIAVDGVTGRVFASMP SAQSLAVMAAPLRVSGAQSDPSEQPQARNLPMPGPPLALAYDAQRGSLFVGLAGEDPLSLLVVNPDNGELLARWRGGNTP EAMALDAERQRLVVLNSGSQDLTVLDLSRSGEALQRVGLDWRPTRLALSPDGRWAYVTSRDSDRLQLVDLQTGRLVASLR LQGQPTGLVMLGERDLWVVAAGIPALRRLQDIQAQVGDGGTEVLNGGVPSPGNRGVVTGRVLDIAGQPVQTGVLHLAATP TQPRQTVRIAADGTYVLPELSAGLYLVDVEVPGFPLTSTQVEVRAGFVSTQDIRLPPGEPTRRPEGIGLLPDEPVYSDEL ARHLSMALKELQPQRPVILLKGPLGPDPRFEPLLPLTQGLTLLDRDERYTADLAKLKAIGDALGLRYILLTQMQISRDYN RQGNSLLNTALRFVAPTVPVEIPNFTPNQLRSRGVVVVVDLQRDRPGDRARYYEAYGRDDVGGDPMFEDAAAGLFRLQVR NMVPVFVQQWQTNNPFSG
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70460; Mature: 70460
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWQWLVVLSGVLGLGSPVLGQGIPSPEAGSSSAGRNFSADGNGLRTEGDWLLPLRSSAD CCEEEEEEHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH RIDGVPDRGWVAVGLLEEQAVTLLDGASGDPLWQAAVGFAPSVVRVDEARQVVYASGPNA HCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCEEEEECCCCC PGLVALDLLTGELIQAYGLPAGVLDIAVDGVTGRVFASMPSAQSLAVMAAPLRVSGAQSD CCEEEEEHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEECEEECCCCCC PSEQPQARNLPMPGPPLALAYDAQRGSLFVGLAGEDPLSLLVVNPDNGELLARWRGGNTP CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCC EAMALDAERQRLVVLNSGSQDLTVLDLSRSGEALQRVGLDWRPTRLALSPDGRWAYVTSR CEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCEEEEECCCCCEEEEECC DSDRLQLVDLQTGRLVASLRLQGQPTGLVMLGERDLWVVAAGIPALRRLQDIQAQVGDGG CCCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCH TEVLNGGVPSPGNRGVVTGRVLDIAGQPVQTGVLHLAATPTQPRQTVRIAADGTYVLPEL HHHHCCCCCCCCCCCEEEEEEEECCCCCHHCCEEEEEECCCCCCEEEEEEECCCEEEEEC SAGLYLVDVEVPGFPLTSTQVEVRAGFVSTQDIRLPPGEPTRRPEGIGLLPDEPVYSDEL CCCEEEEEEECCCCCCCCCEEEEEECEEECCCEECCCCCCCCCCCCCCCCCCCCCCHHHH ARHLSMALKELQPQRPVILLKGPLGPDPRFEPLLPLTQGLTLLDRDERYTADLAKLKAIG HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEECCCHHHHHHHHHHHHH DALGLRYILLTQMQISRDYNRQGNSLLNTALRFVAPTVPVEIPNFTPNQLRSRGVVVVVD HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHCCCEEEEEE LQRDRPGDRARYYEAYGRDDVGGDPMFEDAAAGLFRLQVRNMVPVFVQQWQTNNPFSG ECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHEEEEEHHCCCHHHHHHCCCCCCCCC >Mature Secondary Structure MRWQWLVVLSGVLGLGSPVLGQGIPSPEAGSSSAGRNFSADGNGLRTEGDWLLPLRSSAD CCEEEEEEHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH RIDGVPDRGWVAVGLLEEQAVTLLDGASGDPLWQAAVGFAPSVVRVDEARQVVYASGPNA HCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCEEEEECCCCC PGLVALDLLTGELIQAYGLPAGVLDIAVDGVTGRVFASMPSAQSLAVMAAPLRVSGAQSD CCEEEEEHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEECEEECCCCCC PSEQPQARNLPMPGPPLALAYDAQRGSLFVGLAGEDPLSLLVVNPDNGELLARWRGGNTP CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCC EAMALDAERQRLVVLNSGSQDLTVLDLSRSGEALQRVGLDWRPTRLALSPDGRWAYVTSR CEEEECCCCCEEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCEEEEECCCCCEEEEECC DSDRLQLVDLQTGRLVASLRLQGQPTGLVMLGERDLWVVAAGIPALRRLQDIQAQVGDGG CCCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCH TEVLNGGVPSPGNRGVVTGRVLDIAGQPVQTGVLHLAATPTQPRQTVRIAADGTYVLPEL HHHHCCCCCCCCCCCEEEEEEEECCCCCHHCCEEEEEECCCCCCEEEEEEECCCEEEEEC SAGLYLVDVEVPGFPLTSTQVEVRAGFVSTQDIRLPPGEPTRRPEGIGLLPDEPVYSDEL CCCEEEEEEECCCCCCCCCEEEEEECEEECCCEECCCCCCCCCCCCCCCCCCCCCCHHHH ARHLSMALKELQPQRPVILLKGPLGPDPRFEPLLPLTQGLTLLDRDERYTADLAKLKAIG HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEEECCCHHHHHHHHHHHHH DALGLRYILLTQMQISRDYNRQGNSLLNTALRFVAPTVPVEIPNFTPNQLRSRGVVVVVD HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHCCCEEEEEE LQRDRPGDRARYYEAYGRDDVGGDPMFEDAAAGLFRLQVRNMVPVFVQQWQTNNPFSG ECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHEEEEEHHCCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA