Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86609040
Identifier: 86609040
GI number: 86609040
Start: 1648296
End: 1649357
Strand: Reverse
Name: 86609040
Synonym: CYB_1575
Alternate gene names: NA
Gene position: 1649357-1648296 (Counterclockwise)
Preceding gene: 86609041
Following gene: 86609036
Centisome position: 54.14
GC content: 62.62
Gene sequence:
>1062_bases ATGCCTTTTTTCTTCTTTCATCCTCTCCGGCACAGGATTAGCTATCGCTACGCAACGCTCTCGCGAACAGGCAGTCTGGC CCTCTGCGGCTGGCTGGCACTGGCTTCAGGAGCGCTGGCTCAGGCTCCGGCCACCCCCATTCCGCGGTTGACGCCGTTGT TTCCCTCCCAAAACAGAGGGCAGCCCCAGGGAACAGCACGGCTGGTGGGGCAGGTGAGCAACAGCGTGGGGCAACCTGTG GCGGGGGCACAGGTGCAGTTGGAGGGCATGGAGAACCCCAATCAGCCGATTCAAACCGATGAGCGGGGCGCTTTTGAGCT AGACCAAGCCCCAGCCGGGCGCCGGATGTTGACGGTGTGGCACCCCGACTATGAAAAGGCAGAGCAGGAGATCCTCCTGC AAGCGGGCCTGACCACCCCTGTGGATGTGGTTTTGCAGGTGCCGATTCGGCCTCAGCCCCGCCGTCGCCTTGGCATTTTG GGGGTGGGAGGGTTGGAGCATACCCAACTGTTGGGCCAGCGCCTGGCCATAGAGGCGGTGCGTCTGGGCTTGATCCCCAA CGGCGAGAAGGTGGTGCCCCTGGACAACCGTCGCATTCAGCCCATTTTGCAGAAGGTGGGCTGGCCCATCTACGAGCTGT TTGAGTGGGATCGCCGCAAGCCGGAGGCGGTGGGCCAATTTTTCGATTACCTGGGCCTGGAAGCCATCGTCATCGCCCGC GTCGATGTCCTCACTCGACCAGCTTCGCCAACGGAGCTGAGCCTGCGTTCCCGCAGCCGCCTGGAACTGTGGCGGTTTGA TGAGCAAGGCAACCTTGTGGTAGATATCCTGGCCGAGGCCAGTCGCGATCAGGTGGAGCGGAGCAACCTCAATGCTGCCG AGCTGGCCCAGCTTTATCAAATCCAAGTCACCCAGATGGCTGCTGAGGTGGGATCCCGCTGGAAGGAGCATCACCCGCTG GCCCAGTACCTAGAACTGGCTCAGGGAGAAGCCCCACCCCCACGCTCTCGCCTGGATACGGCTGTGGAGCTGCGCATCCC CTCTGCCACACCGACTCCCTAG
Upstream 100 bases:
>100_bases TTTTCGGGGTGAGGATCCCTGCAGCAGGATCTTGCCCTGTTCGCGTCAGGGGTGCGGAGCAGAATAGAACCGACTGCTAC TACCGGATGCAACCTTCGCC
Downstream 100 bases:
>100_bases GTCTTAAGCAGAACAGCTCCGGGATCTCTTCTATTGTCGTGAAAGGGATCGTCCTCTGAGTTCGTCTAGCAACGACGGGA GGAGCCGCCCGAAGAGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MPFFFFHPLRHRISYRYATLSRTGSLALCGWLALASGALAQAPATPIPRLTPLFPSQNRGQPQGTARLVGQVSNSVGQPV AGAQVQLEGMENPNQPIQTDERGAFELDQAPAGRRMLTVWHPDYEKAEQEILLQAGLTTPVDVVLQVPIRPQPRRRLGIL GVGGLEHTQLLGQRLAIEAVRLGLIPNGEKVVPLDNRRIQPILQKVGWPIYELFEWDRRKPEAVGQFFDYLGLEAIVIAR VDVLTRPASPTELSLRSRSRLELWRFDEQGNLVVDILAEASRDQVERSNLNAAELAQLYQIQVTQMAAEVGSRWKEHHPL AQYLELAQGEAPPPRSRLDTAVELRIPSATPTP
Sequences:
>Translated_353_residues MPFFFFHPLRHRISYRYATLSRTGSLALCGWLALASGALAQAPATPIPRLTPLFPSQNRGQPQGTARLVGQVSNSVGQPV AGAQVQLEGMENPNQPIQTDERGAFELDQAPAGRRMLTVWHPDYEKAEQEILLQAGLTTPVDVVLQVPIRPQPRRRLGIL GVGGLEHTQLLGQRLAIEAVRLGLIPNGEKVVPLDNRRIQPILQKVGWPIYELFEWDRRKPEAVGQFFDYLGLEAIVIAR VDVLTRPASPTELSLRSRSRLELWRFDEQGNLVVDILAEASRDQVERSNLNAAELAQLYQIQVTQMAAEVGSRWKEHHPL AQYLELAQGEAPPPRSRLDTAVELRIPSATPTP >Mature_352_residues PFFFFHPLRHRISYRYATLSRTGSLALCGWLALASGALAQAPATPIPRLTPLFPSQNRGQPQGTARLVGQVSNSVGQPVA GAQVQLEGMENPNQPIQTDERGAFELDQAPAGRRMLTVWHPDYEKAEQEILLQAGLTTPVDVVLQVPIRPQPRRRLGILG VGGLEHTQLLGQRLAIEAVRLGLIPNGEKVVPLDNRRIQPILQKVGWPIYELFEWDRRKPEAVGQFFDYLGLEAIVIARV DVLTRPASPTELSLRSRSRLELWRFDEQGNLVVDILAEASRDQVERSNLNAAELAQLYQIQVTQMAAEVGSRWKEHHPLA QYLELAQGEAPPPRSRLDTAVELRIPSATPTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39309; Mature: 39177
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFFFFHPLRHRISYRYATLSRTGSLALCGWLALASGALAQAPATPIPRLTPLFPSQNRG CCEEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCC QPQGTARLVGQVSNSVGQPVAGAQVQLEGMENPNQPIQTDERGAFELDQAPAGRRMLTVW CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEE HPDYEKAEQEILLQAGLTTPVDVVLQVPIRPQPRRRLGILGVGGLEHTQLLGQRLAIEAV CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH RLGLIPNGEKVVPLDNRRIQPILQKVGWPIYELFEWDRRKPEAVGQFFDYLGLEAIVIAR HHCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH VDVLTRPASPTELSLRSRSRLELWRFDEQGNLVVDILAEASRDQVERSNLNAAELAQLYQ HHHHCCCCCCCEEHHHCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHH IQVTQMAAEVGSRWKEHHPLAQYLELAQGEAPPPRSRLDTAVELRIPSATPTP HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCEEEEEECCCCCCC >Mature Secondary Structure PFFFFHPLRHRISYRYATLSRTGSLALCGWLALASGALAQAPATPIPRLTPLFPSQNRG CEEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCC QPQGTARLVGQVSNSVGQPVAGAQVQLEGMENPNQPIQTDERGAFELDQAPAGRRMLTVW CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCCEEEEEE HPDYEKAEQEILLQAGLTTPVDVVLQVPIRPQPRRRLGILGVGGLEHTQLLGQRLAIEAV CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH RLGLIPNGEKVVPLDNRRIQPILQKVGWPIYELFEWDRRKPEAVGQFFDYLGLEAIVIAR HHCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH VDVLTRPASPTELSLRSRSRLELWRFDEQGNLVVDILAEASRDQVERSNLNAAELAQLYQ HHHHCCCCCCCEEHHHCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHH IQVTQMAAEVGSRWKEHHPLAQYLELAQGEAPPPRSRLDTAVELRIPSATPTP HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA