Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608806
Identifier: 86608806
GI number: 86608806
Start: 1393730
End: 1394599
Strand: Direct
Name: 86608806
Synonym: CYB_1332
Alternate gene names: NA
Gene position: 1393730-1394599 (Clockwise)
Preceding gene: 86608805
Following gene: 86608807
Centisome position: 45.75
GC content: 54.83
Gene sequence:
>870_bases ATGGCCACTTTTACCCCCTGGATAACCCCCCTCCATCAAGCTTGGCAGGAAGTTTCTCTGACGGGTTGGACAACCCTTTA TGAAGGGATCCCTGCCCATATTGACTGCTTGGGGCCGTTGCTCTACGAGCTGTTTCAAGAGCACTGGGCCGAGATCCAGG TGGGCCATGTGGCGGAAGGCGGGGTGCTGGAGCTGGCTTTCAAGAAACCTCCAGCTTTGTGCGTGCTCTACGATGGCTAT CTAACCGTTGCCACCGAAACTTGGCACCTGCATTTGTGCCTGGAGGAGCACCAAGGCGGCCCCCATCGCAAGACCCCACC CGAGCTGCGCCGCAAAAGATTGGTTAGCCGTGCTGCTCTCTACCGGCGCCTCAATCCCCAAGGTCAGCCCCGCATGTGGG GGATCCAATTCTGGAATGGAGCAGAAGAGCCTTTGCTGCAGATTTTTCTGCCCAGCCCCTTTTTGGGGCCAGAGGAAGAC TACCTGCCGGAAGGCAAAGCAGATTACCAAAAGCTTTCTCTTTACGAGCGCATCCGCGCCATCTATGTGCAGGGGAAAGA GCGGATCCCCTATGAGGATAACCCTCTTAAACGTCCCTACCTTGCCGTTTGTCGTTCCAGCCGTTGTTATCCTTCCCGCA ACTACCAACCGGTTGTGGAAGCTCTGGAATCGGCTCTTCGAGAAGCCAACCTGGACGTACAGGTTATCACCTCAGGCTGC TTGGAAGTTTGCCAACAGGGGCCCGTGGTTTTTTACTCTGGGGATCGCACCTGGTACAAGCGGGTTACTCCCCAAGTAGC TCGGCAAATTGTTTTTGAGCATTTGCTTAATAGCTGTCCTCTGAAAGACCACCTTTTTCCAGGAGATTAA
Upstream 100 bases:
>100_bases TCTACCTCACCAAGCCAGATGGGATCCTACCCTGGGCCGAGCGCCCTCTCAAAAAAGGGGTGATTGCTCGTATTCCACCA CTGCACTGAGGAGCTTTCTC
Downstream 100 bases:
>100_bases AGTCATGATTGGCCTGCAATCGAGTGCTCAACCTATCCCCATTCCCAGCTCTCGCCGCTTAATCCCAGCCCCACTTTGGA TACAAGCTGCTCAAGATTTG
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MATFTPWITPLHQAWQEVSLTGWTTLYEGIPAHIDCLGPLLYELFQEHWAEIQVGHVAEGGVLELAFKKPPALCVLYDGY LTVATETWHLHLCLEEHQGGPHRKTPPELRRKRLVSRAALYRRLNPQGQPRMWGIQFWNGAEEPLLQIFLPSPFLGPEED YLPEGKADYQKLSLYERIRAIYVQGKERIPYEDNPLKRPYLAVCRSSRCYPSRNYQPVVEALESALREANLDVQVITSGC LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVFEHLLNSCPLKDHLFPGD
Sequences:
>Translated_289_residues MATFTPWITPLHQAWQEVSLTGWTTLYEGIPAHIDCLGPLLYELFQEHWAEIQVGHVAEGGVLELAFKKPPALCVLYDGY LTVATETWHLHLCLEEHQGGPHRKTPPELRRKRLVSRAALYRRLNPQGQPRMWGIQFWNGAEEPLLQIFLPSPFLGPEED YLPEGKADYQKLSLYERIRAIYVQGKERIPYEDNPLKRPYLAVCRSSRCYPSRNYQPVVEALESALREANLDVQVITSGC LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVFEHLLNSCPLKDHLFPGD >Mature_288_residues ATFTPWITPLHQAWQEVSLTGWTTLYEGIPAHIDCLGPLLYELFQEHWAEIQVGHVAEGGVLELAFKKPPALCVLYDGYL TVATETWHLHLCLEEHQGGPHRKTPPELRRKRLVSRAALYRRLNPQGQPRMWGIQFWNGAEEPLLQIFLPSPFLGPEEDY LPEGKADYQKLSLYERIRAIYVQGKERIPYEDNPLKRPYLAVCRSSRCYPSRNYQPVVEALESALREANLDVQVITSGCL EVCQQGPVVFYSGDRTWYKRVTPQVARQIVFEHLLNSCPLKDHLFPGD
Specific function: Unknown
COG id: COG3411
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33251; Mature: 33120
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATFTPWITPLHQAWQEVSLTGWTTLYEGIPAHIDCLGPLLYELFQEHWAEIQVGHVAEG CCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECEECCC GVLELAFKKPPALCVLYDGYLTVATETWHLHLCLEEHQGGPHRKTPPELRRKRLVSRAAL CEEEEEECCCCCEEEEECCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRRLNPQGQPRMWGIQFWNGAEEPLLQIFLPSPFLGPEEDYLPEGKADYQKLSLYERIRA HHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IYVQGKERIPYEDNPLKRPYLAVCRSSRCYPSRNYQPVVEALESALREANLDVQVITSGC HHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVFEHLLNSCPLKDHLFPGD HHHHHCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure ATFTPWITPLHQAWQEVSLTGWTTLYEGIPAHIDCLGPLLYELFQEHWAEIQVGHVAEG CCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECEECCC GVLELAFKKPPALCVLYDGYLTVATETWHLHLCLEEHQGGPHRKTPPELRRKRLVSRAAL CEEEEEECCCCCEEEEECCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRRLNPQGQPRMWGIQFWNGAEEPLLQIFLPSPFLGPEEDYLPEGKADYQKLSLYERIRA HHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IYVQGKERIPYEDNPLKRPYLAVCRSSRCYPSRNYQPVVEALESALREANLDVQVITSGC HHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH LEVCQQGPVVFYSGDRTWYKRVTPQVARQIVFEHLLNSCPLKDHLFPGD HHHHHCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA