Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608807
Identifier: 86608807
GI number: 86608807
Start: 1394604
End: 1395251
Strand: Direct
Name: 86608807
Synonym: CYB_1333
Alternate gene names: NA
Gene position: 1394604-1395251 (Clockwise)
Preceding gene: 86608806
Following gene: 86608808
Centisome position: 45.77
GC content: 55.86
Gene sequence:
>648_bases ATGATTGGCCTGCAATCGAGTGCTCAACCTATCCCCATTCCCAGCTCTCGCCGCTTAATCCCAGCCCCACTTTGGATACA AGCTGCTCAAGATTTGGCCCAAGGCTGGTTCTGGCCCAGCTTGTTTACCACCGTCGGCTGTCTCAGCAATATTGCTTATA CATGTACCCTTCCTTTTGTAACTGTTGGTATTGTTGCAGGCACAACTTTAACCCGCCAAAGGGCAGCCATTAGTGCTTTG ATGATTTGGCTGGCCAACCAAATCTTTGGCTACACCTGGCACAACTATCCCCGCACTCCCGATTCGTTTGCCTGGGGGTT GGTGCTGGGGATCGGCACGGTGGGGATTGCTCTTGCTGGCGGTTACCGACCTCTGTTTTCTCAGTCCAAGCCGCTTCGGC CAAGGCAACTGCTGCTGAACTATCTCTGGATCCCGGCCATGCTCATCTTGGGGTTTCTGGCTTTTGAAGGGCTGATTTTG GCCGCCGGCCTGGTTTTGGGGGGAACGGAGGGCCTGACCCTGCCCATTCTGGGCAAAATCTGGCTGCACAACTGGCTGTG GACAGGACTTTGGATTGGGATCCACGCGCTGCTGGTGTGGGACAGAGGACGTCGCCGGGTGTGGCTGGGAGAGGAGAAAC TGCGGTGA
Upstream 100 bases:
>100_bases TACAAGCGGGTTACTCCCCAAGTAGCTCGGCAAATTGTTTTTGAGCATTTGCTTAATAGCTGTCCTCTGAAAGACCACCT TTTTCCAGGAGATTAAAGTC
Downstream 100 bases:
>100_bases GCTGCTCCCGTACAAGCTCTTCCCATCCCGTCAGCGGTGCGGAGTACCTTTGCAGTGATCTAGAGCATCCCCAAGAGGGA TCCAGGCCAAAATAGGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MIGLQSSAQPIPIPSSRRLIPAPLWIQAAQDLAQGWFWPSLFTTVGCLSNIAYTCTLPFVTVGIVAGTTLTRQRAAISAL MIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGIALAGGYRPLFSQSKPLRPRQLLLNYLWIPAMLILGFLAFEGLIL AAGLVLGGTEGLTLPILGKIWLHNWLWTGLWIGIHALLVWDRGRRRVWLGEEKLR
Sequences:
>Translated_215_residues MIGLQSSAQPIPIPSSRRLIPAPLWIQAAQDLAQGWFWPSLFTTVGCLSNIAYTCTLPFVTVGIVAGTTLTRQRAAISAL MIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGIALAGGYRPLFSQSKPLRPRQLLLNYLWIPAMLILGFLAFEGLIL AAGLVLGGTEGLTLPILGKIWLHNWLWTGLWIGIHALLVWDRGRRRVWLGEEKLR >Mature_215_residues MIGLQSSAQPIPIPSSRRLIPAPLWIQAAQDLAQGWFWPSLFTTVGCLSNIAYTCTLPFVTVGIVAGTTLTRQRAAISAL MIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGIALAGGYRPLFSQSKPLRPRQLLLNYLWIPAMLILGFLAFEGLIL AAGLVLGGTEGLTLPILGKIWLHNWLWTGLWIGIHALLVWDRGRRRVWLGEEKLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23869; Mature: 23869
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGLQSSAQPIPIPSSRRLIPAPLWIQAAQDLAQGWFWPSLFTTVGCLSNIAYTCTLPFV CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TVGIVAGTTLTRQRAAISALMIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGIALAG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC GYRPLFSQSKPLRPRQLLLNYLWIPAMLILGFLAFEGLILAAGLVLGGTEGLTLPILGKI CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH WLHNWLWTGLWIGIHALLVWDRGRRRVWLGEEKLR HHHHHHHHHHHHHHHHHHHEECCCCEEECCHHCCC >Mature Secondary Structure MIGLQSSAQPIPIPSSRRLIPAPLWIQAAQDLAQGWFWPSLFTTVGCLSNIAYTCTLPFV CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TVGIVAGTTLTRQRAAISALMIWLANQIFGYTWHNYPRTPDSFAWGLVLGIGTVGIALAG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC GYRPLFSQSKPLRPRQLLLNYLWIPAMLILGFLAFEGLILAAGLVLGGTEGLTLPILGKI CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH WLHNWLWTGLWIGIHALLVWDRGRRRVWLGEEKLR HHHHHHHHHHHHHHHHHHHEECCCCEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA