Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608798
Identifier: 86608798
GI number: 86608798
Start: 1386259
End: 1387086
Strand: Direct
Name: 86608798
Synonym: CYB_1325
Alternate gene names: NA
Gene position: 1386259-1387086 (Clockwise)
Preceding gene: 86608793
Following gene: 86608801
Centisome position: 45.5
GC content: 57.73
Gene sequence:
>828_bases TTGCAAGGGTTCGATGCATCCACTCGGTTGACTCGACGGGACGACCTCACCATGGTTTCACAATGGAAACAGCATCTGAA GAACTACTTCGTGGCGGGGTTGCTGGTGGTGATCCCTCTGGCAACTACCATTTGGCTGACGGTGGAGGTGGCCACCTGGA GCATTGGCTTTCTGACCAGCATTCCGAAGCAGTTCAATCCCATCCAGGGTTTGCACCCGATCTTGATCAACCTCATCGAT CTGGCGGTGGGCCTGTTGACGCCGATTGTGCTCATCCTGTTGATTGGCTTCATGGCCCGCAACATTGTCGGCCAGTGGCT GCTCAATCTCAGCGAACAGTTGCTCCATGCGATTCCGGTGGCGGGGCTGGTGTACAAGACCTTGAAGCAATTGGTCAGTG TTTTGTTTGCCCCCAACAATCAGCGCTTTCGGCGGGTGGTGTTGGTGGAATATCCCCGACCAGGAGCTTGGGCGCTGGCC TTTGTGACGGGCACCATTCAAACTCCCATTCGGCCCGATGGGCCGCAGCGCTCCCTTGGCCTGTTTGTGCCCACCACCCC CAATCCAACGACGGGCTGGTACGCCATTGTGCCGGAAGACCAGGTGGTGGAAGTGTTCATGCCGGTGGAAGATGCTTTTA AGATGCTCATTTCCGGCGGCATTGTCACCCCTGAGAGTTTTGAAGCGGGGCTGCAGCGGCGAGAAGGAGCTTTGGCCGTG ACCATGCCCAGTTTGCGGGAGCTGGTGGAGCAGGAGCGGGTGGCAGGATCCCCCAGGGCTGACTCGGTGGGCTCTGAGGT AGGTTTTGAGACTGAAGGGATCCCTTAA
Upstream 100 bases:
>100_bases GCTTTTTGGCAGCCCGATTTCTTTTGCCGGCAAGTTGCGGCTGCCCCCCGTGAGGGCAACGCAGAAGGCAGGTATCATGA TTGCCATCTGCAAGCTTCAC
Downstream 100 bases:
>100_bases TCCTGCTTTCCTGTCCCTGCAGAAGGGCCGGGCTGCCAGAGCTGGTATTCTTTGGCCTGTTCCAAGCGCACATAAAAAGG CCGCATTTGCCGATCCAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MQGFDASTRLTRRDDLTMVSQWKQHLKNYFVAGLLVVIPLATTIWLTVEVATWSIGFLTSIPKQFNPIQGLHPILINLID LAVGLLTPIVLILLIGFMARNIVGQWLLNLSEQLLHAIPVAGLVYKTLKQLVSVLFAPNNQRFRRVVLVEYPRPGAWALA FVTGTIQTPIRPDGPQRSLGLFVPTTPNPTTGWYAIVPEDQVVEVFMPVEDAFKMLISGGIVTPESFEAGLQRREGALAV TMPSLRELVEQERVAGSPRADSVGSEVGFETEGIP
Sequences:
>Translated_275_residues MQGFDASTRLTRRDDLTMVSQWKQHLKNYFVAGLLVVIPLATTIWLTVEVATWSIGFLTSIPKQFNPIQGLHPILINLID LAVGLLTPIVLILLIGFMARNIVGQWLLNLSEQLLHAIPVAGLVYKTLKQLVSVLFAPNNQRFRRVVLVEYPRPGAWALA FVTGTIQTPIRPDGPQRSLGLFVPTTPNPTTGWYAIVPEDQVVEVFMPVEDAFKMLISGGIVTPESFEAGLQRREGALAV TMPSLRELVEQERVAGSPRADSVGSEVGFETEGIP >Mature_275_residues MQGFDASTRLTRRDDLTMVSQWKQHLKNYFVAGLLVVIPLATTIWLTVEVATWSIGFLTSIPKQFNPIQGLHPILINLID LAVGLLTPIVLILLIGFMARNIVGQWLLNLSEQLLHAIPVAGLVYKTLKQLVSVLFAPNNQRFRRVVLVEYPRPGAWALA FVTGTIQTPIRPDGPQRSLGLFVPTTPNPTTGWYAIVPEDQVVEVFMPVEDAFKMLISGGIVTPESFEAGLQRREGALAV TMPSLRELVEQERVAGSPRADSVGSEVGFETEGIP
Specific function: Unknown
COG id: COG2928
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30304; Mature: 30304
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGFDASTRLTRRDDLTMVSQWKQHLKNYFVAGLLVVIPLATTIWLTVEVATWSIGFLTS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHH IPKQFNPIQGLHPILINLIDLAVGLLTPIVLILLIGFMARNIVGQWLLNLSEQLLHAIPV CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLVYKTLKQLVSVLFAPNNQRFRRVVLVEYPRPGAWALAFVTGTIQTPIRPDGPQRSLG HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCE LFVPTTPNPTTGWYAIVPEDQVVEVFMPVEDAFKMLISGGIVTPESFEAGLQRREGALAV EEECCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE TMPSLRELVEQERVAGSPRADSVGSEVGFETEGIP ECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQGFDASTRLTRRDDLTMVSQWKQHLKNYFVAGLLVVIPLATTIWLTVEVATWSIGFLTS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHH IPKQFNPIQGLHPILINLIDLAVGLLTPIVLILLIGFMARNIVGQWLLNLSEQLLHAIPV CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLVYKTLKQLVSVLFAPNNQRFRRVVLVEYPRPGAWALAFVTGTIQTPIRPDGPQRSLG HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCE LFVPTTPNPTTGWYAIVPEDQVVEVFMPVEDAFKMLISGGIVTPESFEAGLQRREGALAV EEECCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE TMPSLRELVEQERVAGSPRADSVGSEVGFETEGIP ECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA