Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608762
Identifier: 86608762
GI number: 86608762
Start: 1342377
End: 1343864
Strand: Direct
Name: 86608762
Synonym: CYB_1287
Alternate gene names: NA
Gene position: 1342377-1343864 (Clockwise)
Preceding gene: 86608761
Following gene: 86608763
Centisome position: 44.06
GC content: 61.56
Gene sequence:
>1488_bases CTGACGCGGTGGTTCCCACAGCCTCTGGATCGCTGGGTTGCCCGGATTACCCTCTGCAACCTGGCCATCGGGGTGATCCT GGTGGTGTTGGGCAACCACACAGCTCCTTACGTGCGGGACTTTAACTGGCAACAGCAACGGGTGGGGGCGCAAGAAGTGC AGATGGTGCTCACCTTCAACCGCCCGATGGATCCCGTCAGTGTTGAAGAGCATTTGGAGATCCAGCCCCCTCTGCCAGGC CGAATGCGCAAGCTGGGTCGCCGCTTTTTTTGGACGCTGACAGAACCAGCCCCTTACGGCCAGACCTACCGGGTGCGCCT GCAGGCAGCCGTGGATGAACGGGGCCAGCCCATGGCCCAGCCCTTTGAGGGGGAATTCCGCACGCCGGATCGGCAGTTGC TGGGGATCAGCACCGAACCTGCCCAGCGAGGGCGACTGTTTCTGTTCAACCTGGAGACGGGAGCCGCTACTCTGCTGACT CCAGCTGGGGTCAAGGTAACCCAAATGCAGCCCAGTGCTGATGGCCGCTTCGTGTACTATTTCGCCACGGCCACCAACCT ACAGCACCAGGATCTGTACCGGCTGGATCTGGAGGATCTGTCTTCGCGGTTGCTGCTGGATCATCAGGGTTACCAAAACC TGCGCTTCCAAGTCTCGCCGACGGGGGAACTGGTGGTGGCAGAGCGGATCCCGCTGCAACGGGATCCCATGGCTGCCGTC CAGACGGAGCTGTGGATCCAGAAAACGAGCCGGGATCCCTTTGAACGTCTAGAGCTGGATACGGCGGTGGGGGGAGATTT TTTCATCAGCCCCGATGAGAGCAGCCTGCTCATCTCGCAGGGACAGGGGGTGGGGATCGTACCCTTGCATCCACGGGCGG CAGCGGAGAGCTTTCTAGCCCAGTTCGGCCAAACCTTAGCCATCCGCCCCGATGGGGCTTTCGGGGCTTTGCTGCGCTTC AATCCCGACTACACCCGCAGCCTCTCCATCGTCAGCAATACCGGCAACAGCGAGGAGATTTTGAGAACCCAGGGATCCAT CCTGAAAGGGGCTTTTTCCCCTCGGGCGCCCATCTTCTACGCCTTGGTCAGTGAGGTCTCTCACGTTAGCGGTGCGGAGC ATTATTCTGTTGGCGAGGTCGCGATGGACTCCCCCAGCTACACCGAGTCGCCCCGCCTGCTGGCGATAACGCTCGGCACT GAAGCAGGCAACGCCATAGAGGTGGTTCGAGCCACCTATCCCGTCGATCTGGACTTCAGCATTTCCCCGGATGGACGCAT GCTGGCCTACACGCTCTTGGAACCGTTCCCAGGGATCCCGGATCCCTCGGCTCCCCTTAGCCGTAGCGGGCAAGCCATCA TGGCCTCGCAAGTGTGGTTGGTGGATTTGCAGGACGGGCTGCCCATTCCTGATGGACAAAGTGGTTCGCACCGCTGGCGG GAACGCCGCCTACCGCTGGGCAGCAGCGCCCTAGCCTGGATCCCCTAG
Upstream 100 bases:
>100_bases TAGAGTCATGCTCCCCAAGTTCTGGCTGCCCATACCTGTCTGTTGTTTGTAACCTATGAGTCAGATGTCTGCCCGGTCGG GATCTTACTGGCGCGCAACC
Downstream 100 bases:
>100_bases AGCGGGAAAGCCACTTGGAGAACAAACCTGCCTAGAATCAAGACAGGGTGTGCGAGGAGAGGTGATATGCGGCTCATTGA CGAGCAGGGGCGGCTTTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MTRWFPQPLDRWVARITLCNLAIGVILVVLGNHTAPYVRDFNWQQQRVGAQEVQMVLTFNRPMDPVSVEEHLEIQPPLPG RMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMAQPFEGEFRTPDRQLLGISTEPAQRGRLFLFNLETGAATLLT PAGVKVTQMQPSADGRFVYYFATATNLQHQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAERIPLQRDPMAAV QTELWIQKTSRDPFERLELDTAVGGDFFISPDESSLLISQGQGVGIVPLHPRAAAESFLAQFGQTLAIRPDGAFGALLRF NPDYTRSLSIVSNTGNSEEILRTQGSILKGAFSPRAPIFYALVSEVSHVSGAEHYSVGEVAMDSPSYTESPRLLAITLGT EAGNAIEVVRATYPVDLDFSISPDGRMLAYTLLEPFPGIPDPSAPLSRSGQAIMASQVWLVDLQDGLPIPDGQSGSHRWR ERRLPLGSSALAWIP
Sequences:
>Translated_495_residues MTRWFPQPLDRWVARITLCNLAIGVILVVLGNHTAPYVRDFNWQQQRVGAQEVQMVLTFNRPMDPVSVEEHLEIQPPLPG RMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMAQPFEGEFRTPDRQLLGISTEPAQRGRLFLFNLETGAATLLT PAGVKVTQMQPSADGRFVYYFATATNLQHQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAERIPLQRDPMAAV QTELWIQKTSRDPFERLELDTAVGGDFFISPDESSLLISQGQGVGIVPLHPRAAAESFLAQFGQTLAIRPDGAFGALLRF NPDYTRSLSIVSNTGNSEEILRTQGSILKGAFSPRAPIFYALVSEVSHVSGAEHYSVGEVAMDSPSYTESPRLLAITLGT EAGNAIEVVRATYPVDLDFSISPDGRMLAYTLLEPFPGIPDPSAPLSRSGQAIMASQVWLVDLQDGLPIPDGQSGSHRWR ERRLPLGSSALAWIP >Mature_494_residues TRWFPQPLDRWVARITLCNLAIGVILVVLGNHTAPYVRDFNWQQQRVGAQEVQMVLTFNRPMDPVSVEEHLEIQPPLPGR MRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMAQPFEGEFRTPDRQLLGISTEPAQRGRLFLFNLETGAATLLTP AGVKVTQMQPSADGRFVYYFATATNLQHQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAERIPLQRDPMAAVQ TELWIQKTSRDPFERLELDTAVGGDFFISPDESSLLISQGQGVGIVPLHPRAAAESFLAQFGQTLAIRPDGAFGALLRFN PDYTRSLSIVSNTGNSEEILRTQGSILKGAFSPRAPIFYALVSEVSHVSGAEHYSVGEVAMDSPSYTESPRLLAITLGTE AGNAIEVVRATYPVDLDFSISPDGRMLAYTLLEPFPGIPDPSAPLSRSGQAIMASQVWLVDLQDGLPIPDGQSGSHRWRE RRLPLGSSALAWIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54978; Mature: 54847
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRWFPQPLDRWVARITLCNLAIGVILVVLGNHTAPYVRDFNWQQQRVGAQEVQMVLTFN CCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEECCCCHHHHCCHHHEEEEEEEC RPMDPVSVEEHLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMAQ CCCCCCCHHHCEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC PFEGEFRTPDRQLLGISTEPAQRGRLFLFNLETGAATLLTPAGVKVTQMQPSADGRFVYY CCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEE FATATNLQHQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAERIPLQRDPMAAV EEEECCCCCCCEEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCHHHH QTELWIQKTSRDPFERLELDTAVGGDFFISPDESSLLISQGQGVGIVPLHPRAAAESFLA HHHHHHEECCCCHHHHHEEHHCCCCCEEECCCCCEEEEECCCCEEEEECCCHHHHHHHHH QFGQTLAIRPDGAFGALLRFNPDYTRSLSIVSNTGNSEEILRTQGSILKGAFSPRAPIFY HCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHCCCHHCCCCCCCCHHHH ALVSEVSHVSGAEHYSVGEVAMDSPSYTESPRLLAITLGTEAGNAIEVVRATYPVDLDFS HHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEECCEEEEEE ISPDGRMLAYTLLEPFPGIPDPSAPLSRSGQAIMASQVWLVDLQDGLPIPDGQSGSHRWR ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHH ERRLPLGSSALAWIP HHCCCCCCCCEECCC >Mature Secondary Structure TRWFPQPLDRWVARITLCNLAIGVILVVLGNHTAPYVRDFNWQQQRVGAQEVQMVLTFN CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEECCCCHHHHCCHHHEEEEEEEC RPMDPVSVEEHLEIQPPLPGRMRKLGRRFFWTLTEPAPYGQTYRVRLQAAVDERGQPMAQ CCCCCCCHHHCEEECCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC PFEGEFRTPDRQLLGISTEPAQRGRLFLFNLETGAATLLTPAGVKVTQMQPSADGRFVYY CCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEE FATATNLQHQDLYRLDLEDLSSRLLLDHQGYQNLRFQVSPTGELVVAERIPLQRDPMAAV EEEECCCCCCCEEEECHHHHHHHEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCHHHH QTELWIQKTSRDPFERLELDTAVGGDFFISPDESSLLISQGQGVGIVPLHPRAAAESFLA HHHHHHEECCCCHHHHHEEHHCCCCCEEECCCCCEEEEECCCCEEEEECCCHHHHHHHHH QFGQTLAIRPDGAFGALLRFNPDYTRSLSIVSNTGNSEEILRTQGSILKGAFSPRAPIFY HCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHCCCHHCCCCCCCCHHHH ALVSEVSHVSGAEHYSVGEVAMDSPSYTESPRLLAITLGTEAGNAIEVVRATYPVDLDFS HHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEEEEECCEEEEEE ISPDGRMLAYTLLEPFPGIPDPSAPLSRSGQAIMASQVWLVDLQDGLPIPDGQSGSHRWR ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHH ERRLPLGSSALAWIP HHCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA