Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608761

Identifier: 86608761

GI number: 86608761

Start: 1340741

End: 1342003

Strand: Direct

Name: 86608761

Synonym: CYB_1286

Alternate gene names: NA

Gene position: 1340741-1342003 (Clockwise)

Preceding gene: 86608758

Following gene: 86608762

Centisome position: 44.01

GC content: 57.32

Gene sequence:

>1263_bases
ATGGCCAGCTCTGCCCTCTCCGCTTCGGAACGAGCCTTGAGCCTTTACGAGGCTCTGCCCTACCCTAATGTGCCCCTCTC
GCAGACGGCCCGCAACGCCCTGCCGGAGATGTTCAAGATGAGCTATACCACGGCTCAGTACCTGCGCACCCATACCATCG
TCCCGCCAGAGGGCAAGGTGTTGTTGAATGCCGGCTGTGGCTCCGGCTGGGAAACGTTGATGATGGCCGAGGCCAATCCA
GGGGCCCAGATTGTTGCCTGTGATCTGTCTCCGGCTTCGGTCAAGCTTACCGAGGAACGCCTGCGCCACCACGGCTTCGC
AGATGCCGAGTTTTATGTCCTCAATCTGCTGGAGCTGGAGCGTCTGGGGATCCAGTTTGATTTCATTAGCCTCAATGATG
TTTTGTATTTGCTGGAGGATCCCACCGAGGGCCTGCGGGCCATGAAAAATGTCCTCAAGCCCGATGGCATCATCCGGGCC
AATCTCCACAGCCGCTACCAACGGCAGGTGTTTTTCCGCCTGCAAGAGGGGTTGCAAAAGGTGGGGCAATTTGACGTTCC
GCCAGCAGTAGGGGCCAAGAATGTGCGGGAGTTCATGGGATCCCTGCGAGAAGAAGTGGCCCAGGCGGTGCTCTGGAACC
CGGCCAACTATGCCGAAGATGCGGCCATTATGAATAATTACCTACTCTCCAACGACAAAGGGTTCACGATCCCCGACCTG
TTTCGCATGTTGCAGCAGGCGGGGTTGAGCTTTTTGAGCTTGGTGGATAGGCCCGACTGGTCGGTGGAGTCTTTGTTTAA
AGAGGTGCCTGAGTTTGTGCGGCAGCGGTTGGCAACCCTCAGCATCATGGAGCGGCTGCATCTGTATGAACTCCTTCGCC
CTGTCCATCGCCTCATCGACTTTTGGGCGGAGCATGCCGGCTCTTCGCCGGTGCTGCCTTGGAGTGACGAAGATTGGCTG
TCGGGATCCGTACAATTCAATCCCCTGTTGATGGACAACCCCCGCTTTCGCCAGGAGTACAGCAAAGCCCTGCAAGAGAA
GCGGCCCTACGAAATGCAGTGGACAGGGGCCACCCACGGGCGGATCAGCATCCCTGCCGAGAACGTGAGCTGGTTGGCGC
CACTGCTTCAAGGACCAACGCCGGTTCGAGAGCTGATTCAACAGGCCGTCCAGTTGGGATCCCCAGATGAAGAACGAACA
ACCGCTGAGGTGCTGACCTTCCTAACCAACCTAGAAGACTTTCTTTTTTTGATGCTGCAATAG

Upstream 100 bases:

>100_bases
GGAAGCAGCAGTCATGGCAAGTTCTTCGCGGATCCCTGAGGCTGTCGCGACCAGGGCTACACTCAATCATAAATTGAACC
GTTGAGCCTTTCCCCTGCCT

Downstream 100 bases:

>100_bases
GCAGCTGATACATTTACGCTGAACACTGCTGAACATCACTGTTCAACTATGCAGCGATAGCATTCTGTTTGTTTCCAAAC
AGAATGGCGGTATCCCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MASSALSASERALSLYEALPYPNVPLSQTARNALPEMFKMSYTTAQYLRTHTIVPPEGKVLLNAGCGSGWETLMMAEANP
GAQIVACDLSPASVKLTEERLRHHGFADAEFYVLNLLELERLGIQFDFISLNDVLYLLEDPTEGLRAMKNVLKPDGIIRA
NLHSRYQRQVFFRLQEGLQKVGQFDVPPAVGAKNVREFMGSLREEVAQAVLWNPANYAEDAAIMNNYLLSNDKGFTIPDL
FRMLQQAGLSFLSLVDRPDWSVESLFKEVPEFVRQRLATLSIMERLHLYELLRPVHRLIDFWAEHAGSSPVLPWSDEDWL
SGSVQFNPLLMDNPRFRQEYSKALQEKRPYEMQWTGATHGRISIPAENVSWLAPLLQGPTPVRELIQQAVQLGSPDEERT
TAEVLTFLTNLEDFLFLMLQ

Sequences:

>Translated_420_residues
MASSALSASERALSLYEALPYPNVPLSQTARNALPEMFKMSYTTAQYLRTHTIVPPEGKVLLNAGCGSGWETLMMAEANP
GAQIVACDLSPASVKLTEERLRHHGFADAEFYVLNLLELERLGIQFDFISLNDVLYLLEDPTEGLRAMKNVLKPDGIIRA
NLHSRYQRQVFFRLQEGLQKVGQFDVPPAVGAKNVREFMGSLREEVAQAVLWNPANYAEDAAIMNNYLLSNDKGFTIPDL
FRMLQQAGLSFLSLVDRPDWSVESLFKEVPEFVRQRLATLSIMERLHLYELLRPVHRLIDFWAEHAGSSPVLPWSDEDWL
SGSVQFNPLLMDNPRFRQEYSKALQEKRPYEMQWTGATHGRISIPAENVSWLAPLLQGPTPVRELIQQAVQLGSPDEERT
TAEVLTFLTNLEDFLFLMLQ
>Mature_419_residues
ASSALSASERALSLYEALPYPNVPLSQTARNALPEMFKMSYTTAQYLRTHTIVPPEGKVLLNAGCGSGWETLMMAEANPG
AQIVACDLSPASVKLTEERLRHHGFADAEFYVLNLLELERLGIQFDFISLNDVLYLLEDPTEGLRAMKNVLKPDGIIRAN
LHSRYQRQVFFRLQEGLQKVGQFDVPPAVGAKNVREFMGSLREEVAQAVLWNPANYAEDAAIMNNYLLSNDKGFTIPDLF
RMLQQAGLSFLSLVDRPDWSVESLFKEVPEFVRQRLATLSIMERLHLYELLRPVHRLIDFWAEHAGSSPVLPWSDEDWLS
GSVQFNPLLMDNPRFRQEYSKALQEKRPYEMQWTGATHGRISIPAENVSWLAPLLQGPTPVRELIQQAVQLGSPDEERTT
AEVLTFLTNLEDFLFLMLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2067c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 47598; Mature: 47467

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSALSASERALSLYEALPYPNVPLSQTARNALPEMFKMSYTTAQYLRTHTIVPPEGKV
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLNAGCGSGWETLMMAEANPGAQIVACDLSPASVKLTEERLRHHGFADAEFYVLNLLELE
EEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RLGIQFDFISLNDVLYLLEDPTEGLRAMKNVLKPDGIIRANLHSRYQRQVFFRLQEGLQK
HHCCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
VGQFDVPPAVGAKNVREFMGSLREEVAQAVLWNPANYAEDAAIMNNYLLSNDKGFTIPDL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
FRMLQQAGLSFLSLVDRPDWSVESLFKEVPEFVRQRLATLSIMERLHLYELLRPVHRLID
HHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWAEHAGSSPVLPWSDEDWLSGSVQFNPLLMDNPRFRQEYSKALQEKRPYEMQWTGATHG
HHHHHCCCCCCCCCCCCCCCCCCEEECCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
RISIPAENVSWLAPLLQGPTPVRELIQQAVQLGSPDEERTTAEVLTFLTNLEDFLFLMLQ
EEECCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASSALSASERALSLYEALPYPNVPLSQTARNALPEMFKMSYTTAQYLRTHTIVPPEGKV
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLNAGCGSGWETLMMAEANPGAQIVACDLSPASVKLTEERLRHHGFADAEFYVLNLLELE
EEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RLGIQFDFISLNDVLYLLEDPTEGLRAMKNVLKPDGIIRANLHSRYQRQVFFRLQEGLQK
HHCCEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
VGQFDVPPAVGAKNVREFMGSLREEVAQAVLWNPANYAEDAAIMNNYLLSNDKGFTIPDL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
FRMLQQAGLSFLSLVDRPDWSVESLFKEVPEFVRQRLATLSIMERLHLYELLRPVHRLID
HHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWAEHAGSSPVLPWSDEDWLSGSVQFNPLLMDNPRFRQEYSKALQEKRPYEMQWTGATHG
HHHHHCCCCCCCCCCCCCCCCCCEEECCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
RISIPAENVSWLAPLLQGPTPVRELIQQAVQLGSPDEERTTAEVLTFLTNLEDFLFLMLQ
EEECCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3041005; 1901865 [H]