| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608520
Identifier: 86608520
GI number: 86608520
Start: 1082302
End: 1083090
Strand: Direct
Name: 86608520
Synonym: CYB_1041
Alternate gene names: NA
Gene position: 1082302-1083090 (Clockwise)
Preceding gene: 86608519
Following gene: 86608521
Centisome position: 35.52
GC content: 60.58
Gene sequence:
>789_bases ATGAACGCCTTCTTTCGCAAGTTGGGTGCCCTCTTCTCCGCCTACTACGCCTACATGCTGGAGTACCGGGCCGAGCTGAT CCTGTGGGTGTTGGCCGGATCCCTGCCCCTGATCATGATGGGGGTGTGGAGCGAGGCAGCCCGCTCAGGAGACTTCTCGC TGTCTGCTCTGGAGTTCATCCGCTACTTTCTGGCGGTGTTCCTGGTGCGCCAGTTCACCATCGTCTGGGTCATCTGGGAC TTTGAGCGAGAGGTGGTCGAAGGCAAATTATCTCCTCGCCTGTTGCAGCCTCTGGATCCCGCTTGGCACCATGTGGCCAG CCACCTGATGGAGCGCTTGGCCCGTCTCCCCTTTACCCTGGTTTTAATCGCCCTTTTCTTCGTCCTCTACCCCCGTGCCT TTTGGATCCCCTCTTGGGCCCAGGCGGGGCTGGGATCCCTGGCCATTCTCCTGGCTTTTGCCCTGCGCTTTCTCATGCAG TACACCCTGGCGCTGCTGGCCTTTTGGGTGGAACGGGTGACGGCCTTGGAGCAGTTCCATTTTTTGGTGTACTTGTTTTT CTCGGGGGTGATCGCTCCTCTGGAGGTGTTCCCACCACCCGTGCGCCAGGTCTTGGCCTGGACACCCTTCCCCTACCTGG TGCATTTTCCCGCCAGCCTCTGGGCAGGGATCCCGGTGGACATTCTGCGCGGTTTTGGCCTGGGCCTGGCCTGGACGGGC CTGCTCTGGCTGGCTAACCGCTGGTTGTGGCGCAAAGGCTTGCAACAGTACTCGGGAATGGGAGCTTAG
Upstream 100 bases:
>100_bases TTGTTGTGGTGGGAGCGGTGGTCAGCCTGGCCAGCTTGTTGCCCACTTTGCGTCCGCCAGTCTCGTATTGCTCCGCAGCG CTTGCGCAACCGGAATCTCC
Downstream 100 bases:
>100_bases AGGGCCAGGTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTTTAATGA AGTACAATGAACTTATGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Inner Membrane Subunit; ABC Transporter Permease; ABC-2 Type Transport System Permease Protein; Multidrug ABC Transporter; Abc Transporter Permease Protein; ABC Transporter Permease Protein; ABC-Type Transport System Permease Component-Like; Integral Membrane Protein
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MNAFFRKLGALFSAYYAYMLEYRAELILWVLAGSLPLIMMGVWSEAARSGDFSLSALEFIRYFLAVFLVRQFTIVWVIWD FEREVVEGKLSPRLLQPLDPAWHHVASHLMERLARLPFTLVLIALFFVLYPRAFWIPSWAQAGLGSLAILLAFALRFLMQ YTLALLAFWVERVTALEQFHFLVYLFFSGVIAPLEVFPPPVRQVLAWTPFPYLVHFPASLWAGIPVDILRGFGLGLAWTG LLWLANRWLWRKGLQQYSGMGA
Sequences:
>Translated_262_residues MNAFFRKLGALFSAYYAYMLEYRAELILWVLAGSLPLIMMGVWSEAARSGDFSLSALEFIRYFLAVFLVRQFTIVWVIWD FEREVVEGKLSPRLLQPLDPAWHHVASHLMERLARLPFTLVLIALFFVLYPRAFWIPSWAQAGLGSLAILLAFALRFLMQ YTLALLAFWVERVTALEQFHFLVYLFFSGVIAPLEVFPPPVRQVLAWTPFPYLVHFPASLWAGIPVDILRGFGLGLAWTG LLWLANRWLWRKGLQQYSGMGA >Mature_262_residues MNAFFRKLGALFSAYYAYMLEYRAELILWVLAGSLPLIMMGVWSEAARSGDFSLSALEFIRYFLAVFLVRQFTIVWVIWD FEREVVEGKLSPRLLQPLDPAWHHVASHLMERLARLPFTLVLIALFFVLYPRAFWIPSWAQAGLGSLAILLAFALRFLMQ YTLALLAFWVERVTALEQFHFLVYLFFSGVIAPLEVFPPPVRQVLAWTPFPYLVHFPASLWAGIPVDILRGFGLGLAWTG LLWLANRWLWRKGLQQYSGMGA
Specific function: Unknown
COG id: COG4587
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30197; Mature: 30197
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAFFRKLGALFSAYYAYMLEYRAELILWVLAGSLPLIMMGVWSEAARSGDFSLSALEFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH RYFLAVFLVRQFTIVWVIWDFEREVVEGKLSPRLLQPLDPAWHHVASHLMERLARLPFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCHHH VLIALFFVLYPRAFWIPSWAQAGLGSLAILLAFALRFLMQYTLALLAFWVERVTALEQFH HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLVYLFFSGVIAPLEVFPPPVRQVLAWTPFPYLVHFPASLWAGIPVDILRGFGLGLAWTG HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHH LLWLANRWLWRKGLQQYSGMGA HHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNAFFRKLGALFSAYYAYMLEYRAELILWVLAGSLPLIMMGVWSEAARSGDFSLSALEFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH RYFLAVFLVRQFTIVWVIWDFEREVVEGKLSPRLLQPLDPAWHHVASHLMERLARLPFTL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCHHH VLIALFFVLYPRAFWIPSWAQAGLGSLAILLAFALRFLMQYTLALLAFWVERVTALEQFH HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLVYLFFSGVIAPLEVFPPPVRQVLAWTPFPYLVHFPASLWAGIPVDILRGFGLGLAWTG HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHH LLWLANRWLWRKGLQQYSGMGA HHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA