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The map label for this gene is ydcM [C]

Identifier: 86608521

GI number: 86608521

Start: 1083185

End: 1084426

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1042

Alternate gene names: 86608521

Gene position: 1083185-1084426 (Clockwise)

Preceding gene: 86608520

Following gene: 86608522

Centisome position: 35.55

GC content: 55.56

Gene sequence:

>1242_bases
ATGAGCCAAGTCCTGACCGTCTCCTGTAAGCTCAAGGCGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACGATGGAGGC
TTTTGGCCAAGCCTTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTCGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAACAGGTGTGC
AGACGGGTAGCGGGTTCCCGCAAAGTGGCGAGACAGCGCAACCGTCCGGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTA
CGACGCACGTATCTTTTCATTCCGCGAGAAAGACTGGACGGTGTCGCTGACCACGGTTGAAGGGAGAGAACGCTTTGAGC
TAGCCATTGGTAACTACCAGAGGGGAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCAGAAGGATGGC
TCCTACTACATCCAGATTTGCGTAGAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGG
AAGGACAGATATTGCCCATACGTCAGACGGGGACAACTGGAATGGACAGCAGTTGAACAGAGTCCGCGACCACTACTCCC
GGTTGAGGGCGGCACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGG
CTGTCTGGCAAGGAGAGACGCTTTCAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCCAAAGC
TATTGTCTCTAGGGCAAAAGCTACCAACAGCGCTATTGCTCTGGAAGACCTGACAGGGATCCGGGAAAGGGTCAATCAAC
AGCCACGCAGCAAAGCCGAGCGGCGTAGGACCAACAGTTGGGCGTTCTACCAACTACGTCAATTTCTGGAATACAAGGCG
AGGGTTGCAGGGGTTTCTCTGATTCTTGTGCCGCCCGCCTACACGTCGCAGACCTGCCACAAGTGTTTGCACATCCATCC
CGACCCTGCGCAATCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGATTTGAATG
GTGCGAATGTGATTGCGCTCTTGGGGGCTGCCGTAAACCAGCCTAGAGGTCCGGGCTTGTTTTGTTCTCTGGTAGAGCAG
AACAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
GCTTAGAGGGCCAGGTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TAATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACCTTTCAACCAGGCCACCCTTGAAACCACTATTATGGGTCAAGGCACCCCAGCCAAATG
ACGAATCCTGTCCGTCTCCC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSQVLTVSCKLKASQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQQKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRTDIAHTSDGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
LSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKA
RVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPGLFCSLVEQ
NRLRATESPLRTA

Sequences:

>Translated_413_residues
MSQVLTVSCKLKASQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQQKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRTDIAHTSDGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
LSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKA
RVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPGLFCSLVEQ
NRLRATESPLRTA
>Mature_412_residues
SQVLTVSCKLKASQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVCR
RVAGSRKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQQKDGS
YYIQICVEKKPPKQQDTDKVIGVDLGRTDIAHTSDGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQRL
SGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNSWAFYQLRQFLEYKAR
VAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPGLFCSLVEQN
RLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=247, Percent_Identity=28.3400809716599, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46872; Mature: 46741

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTVSCKLKASQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVARQRNRPVKEFKRRFVTYDARIFSFREKDWT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQQKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRTDIAHTSDGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAE
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHH
RRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFK
HHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCC
CGHCGWEGDADLNGANVIALLGAAVNQPRGPGLFCSLVEQNRLRATESPLRTA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQVLTVSCKLKASQSQAAKLDATMEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVARQRNRPVKEFKRRFVTYDARIFSFREKDWT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQQKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRTDIAHTSDGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAE
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHH
RRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFK
HHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCC
CGHCGWEGDADLNGANVIALLGAAVNQPRGPGLFCSLVEQNRLRATESPLRTA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]