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The map label for this gene is ydcM [C]

Identifier: 86608458

GI number: 86608458

Start: 1015075

End: 1016268

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0979

Alternate gene names: 86608458

Gene position: 1015075-1016268 (Clockwise)

Preceding gene: 86608456

Following gene: 86608462

Centisome position: 33.32

GC content: 54.69

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACCGTCTCCTGCAAGCTCAAGGTGTCCCAGTCGCAGGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTAGCGGGTTCCCGCAAA
GTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTACGACGCCCGTATCTTTTCGTTCCG
TCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGTTACCAGAGAG
AACAGTTGGCAGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGCAAAGACGGTTTCTACTCCATTCAAATCTGTGTG
GAAACGGAGCCATCCCCACCGCAAGGCACGGATAGAGTGCTGGGCGTGGATTTGGGAAGGACGGATATTGCTCATACATC
GGAAGGAGATAACTGGAATGGACAGCAGTTGAACAAAGTCCGCGACCACTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAAGCGTGGGTTAATCATCGCATCTCCAAAGCTATTGTCTCCAGGGCAAAAGCTACCAACAGTGCTATCGCTCTGGAAGA
CCTGACAGGGATCCGGGAAAGGGTTAATCAACAGCCACGGAGCAAGACAGAGCGTAGACGGGCCAACAACTGGGCGTTTT
ATCAACTCCGTCAATTTTTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTTTGATTCTGGTGCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTACCGCAGTGGAAAGAAGTTTAAGTGTGGACA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGCTGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
GGTTGGGTTCCAGATGCCTTATTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACTTGCCCATCTGTAAGCGGGCGCTGGTGCGGGGGGCGCCATCCTGCACAATCCAGGTGCGGACGATCTCCACTTCC
TCCGGCGTCCAAAAGCCCAG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGFYSIQICV
ETEPSPPQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANNWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGSRK
VAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGFYSIQICV
ETEPSPPQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANNWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
>Mature_396_residues
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGSRKV
AKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGFYSIQICVE
TEPSPPQGTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANNWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=231, Percent_Identity=29.004329004329, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44926; Mature: 44795

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGFYSIQICVETEPSPPQGTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANNWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGFYSIQICVETEPSPPQGTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANNWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]