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The map label for this gene is 86608306

Identifier: 86608306

GI number: 86608306

Start: 854764

End: 855291

Strand: Direct

Name: 86608306

Synonym: CYB_0824

Alternate gene names: NA

Gene position: 854764-855291 (Clockwise)

Preceding gene: 86608305

Following gene: 86608307

Centisome position: 28.06

GC content: 57.77

Gene sequence:

>528_bases
ATGCCTGTGCGTCTGTATGTTGGAAATCTGCCGGAAGAGGTGGATCGTCAGGCACTGGAGAAGCTCTTTCGCTCTGCCGG
TGAGGTCATTTCCACCAAGGTGATCCGGGATCGGAAGACAGGCAAATGCCGCGGCTTCGGCTTTGTAACGGTGAACACCG
AAGAGCAGGCGCAGCAGTACATCGAAAAGTTCAACGGCCACAGCTTTGGGGATGTCAACTTGCGCATTGAGCTCGCCCAG
CCGCGCGACCGAGGGGAAGAAGGCGAATCCAAAACAGCGACCTCTGAGCCTTCATCCAAAGAGTCCAGAGGTTCCAAAGA
TTCCAGAGCGTCCAGAGATTCTGAGGCCAAGGGCTCTAAAGAGTCGGCAGAAAACCCTGCCCCCAGCAAAAAGCAACGCC
AGCGCGGCAATAAGGGTGGGCGCTCCACCGTCGTCGCCGAAAGTGAGGCAGCCTCTGAGCCGGATCCCCGCTGGGCCAGC
CAGTTGCAGCGGATCAAGGAGCAGCTTCTGCAGGTCACCAATTCCTAA

Upstream 100 bases:

>100_bases
ACTACCGGGTTCCGGGTTTGATGTTATGGGCTTGAGCGCCCTAGATGTAGCGCTTTGCATTTTGGCCTTTTGTTATTTCG
ATTAGGAGCTTCGCTGGATC

Downstream 100 bases:

>100_bases
CCCCCCCGAACGAGTGATAGACACTGTTGGGATCTGACAGTAGGCTGGGTGAGTTGCGACGGCTCTAGGCATGTTTGAGA
GGGGGGTTGGGATGCATAGG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MPVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEKFNGHSFGDVNLRIELAQ
PRDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSKESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWAS
QLQRIKEQLLQVTNS

Sequences:

>Translated_175_residues
MPVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEKFNGHSFGDVNLRIELAQ
PRDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSKESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWAS
QLQRIKEQLLQVTNS
>Mature_174_residues
PVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEKFNGHSFGDVNLRIELAQP
RDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSKESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWASQ
LQRIKEQLLQVTNS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=40.5063291139241, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32564506, Length=77, Percent_Identity=40.2597402597403, Blast_Score=63, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI32564504, Length=77, Percent_Identity=40.2597402597403, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19409; Mature: 19277

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQY
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHH
IEKFNGHSFGDVNLRIELAQPRDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSK
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCHHCCCC
ESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWASQLQRIKEQLLQVTNS
CCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQY
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHH
IEKFNGHSFGDVNLRIELAQPRDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSK
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCHHCCCC
ESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWASQLQRIKEQLLQVTNS
CCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA