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The map label for this gene is yjgF [C]

Identifier: 86608051

GI number: 86608051

Start: 569327

End: 569710

Strand: Direct

Name: yjgF [C]

Synonym: CYB_0559

Alternate gene names: 86608051

Gene position: 569327-569710 (Clockwise)

Preceding gene: 86608048

Following gene: 86608053

Centisome position: 18.69

GC content: 60.16

Gene sequence:

>384_bases
GTGCAAACTGAGGCTGCCCCCGCTCCTGTCGGCCCTTACAGCCAGGGCGTTACTGCTCTGGGGCCGTTTCTGTTCACCGC
CGGACAGGTGGGCCTGGATCCCAAAACCGGCAAACTGGTGGGGGAGGACATTGTTTCTCAAACTCGGCAGGCGTTGCTGA
ACGTGCAGGCAGTGCTGGAAGCGGGGGGCACCACTCTCGCCAATGTGGTGAAGACAACGGTTTTCCTGGCCGATATGGAG
GACTTTGCGGCCATGAACGAGGTTTATCGAGAGTTTTTTGCCACCGATCCGGCTCCGGCCCGCTCTTGCGTGCAGGTGGC
TCGCCTGCCCCTCAATGCCCGAGTGGAAATCGAGGTTGTAGCCTGCTACCCACAATCGACCTAA

Upstream 100 bases:

>100_bases
GCGTAGCGACAGAGTTGGGCAAACCTCTATGGAGCAGACGAAGCCGGCCCAGCCAGAGATCGGCCACCAGCAGGGCCAAA
TCGGGCCAGGCCCTTGTGCT

Downstream 100 bases:

>100_bases
ATGTCTCCTGAGTCCGGCTAGCGGAATGGTTTCTGGGTCGGCGCGGATCCCGGCAAATCGGGAACTGGATCGTAGCCCCC
TGGGTGCCAGGGATGACAGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MQTEAAPAPVGPYSQGVTALGPFLFTAGQVGLDPKTGKLVGEDIVSQTRQALLNVQAVLEAGGTTLANVVKTTVFLADME
DFAAMNEVYREFFATDPAPARSCVQVARLPLNARVEIEVVACYPQST

Sequences:

>Translated_127_residues
MQTEAAPAPVGPYSQGVTALGPFLFTAGQVGLDPKTGKLVGEDIVSQTRQALLNVQAVLEAGGTTLANVVKTTVFLADME
DFAAMNEVYREFFATDPAPARSCVQVARLPLNARVEIEVVACYPQST
>Mature_127_residues
MQTEAAPAPVGPYSQGVTALGPFLFTAGQVGLDPKTGKLVGEDIVSQTRQALLNVQAVLEAGGTTLANVVKTTVFLADME
DFAAMNEVYREFFATDPAPARSCVQVARLPLNARVEIEVVACYPQST

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=44.6280991735537, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=50.4065040650407, Blast_Score=122, Evalue=6e-30,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=46.3414634146341, Blast_Score=116, Evalue=5e-28,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=35.9649122807018, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI87081979, Length=79, Percent_Identity=37.9746835443038, Blast_Score=59, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=117, Percent_Identity=52.991452991453, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=117, Percent_Identity=52.991452991453, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=117, Percent_Identity=52.991452991453, Blast_Score=112, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=41.3223140495868, Blast_Score=91, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=47.1074380165289, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13430; Mature: 13430

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTEAAPAPVGPYSQGVTALGPFLFTAGQVGLDPKTGKLVGEDIVSQTRQALLNVQAVLE
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGGTTLANVVKTTVFLADMEDFAAMNEVYREFFATDPAPARSCVQVARLPLNARVEIEVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEE
ACYPQST
EECCCCC
>Mature Secondary Structure
MQTEAAPAPVGPYSQGVTALGPFLFTAGQVGLDPKTGKLVGEDIVSQTRQALLNVQAVLE
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGGTTLANVVKTTVFLADMEDFAAMNEVYREFFATDPAPARSCVQVARLPLNARVEIEVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEE
ACYPQST
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]