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The map label for this gene is ymfC [C]

Identifier: 86607697

GI number: 86607697

Start: 209503

End: 210327

Strand: Reverse

Name: ymfC [C]

Synonym: CYB_0196

Alternate gene names: 86607697

Gene position: 210327-209503 (Counterclockwise)

Preceding gene: 86607700

Following gene: 86607696

Centisome position: 6.9

GC content: 61.33

Gene sequence:

>825_bases
ATGGCAGAACCCCAACGGCTACAGAAGCTCTTGGCTCAGCAGGGATTGGCCTCGCGTCGCCAGGTGGAAGCCTGGATCCT
GGCCGGGCGCGTTCGGGTCAATGGGAAGGTGGTCACTGAGCTGGGCTCCAAAGCCGACCCAGAGCGGGATTGCATCGAGG
TGAATGGGCAAGTGATCCCTTTGGCCAAGGATCCGGCGCGCTATGTTTTGCTCCTGCACAAGCCAGTGGGGGTTTTGTCA
ACCTGTGCAGATCCTTGGGGACGCAAGACGGTGCTGGATCTGCTCCCCCCATCTTGGAAACGGCAAACCCGCCTCTACCC
GGTGGGCCGGCTGGATGCGGACAGCAGTGGCGCTTTGCTGCTCACCAATGATGGCGACTTGACCTTGAAGCTGACCCATC
CGCGCTATCATCTGCCCAAAACCTACCGGGTACAGGTACAAGGGCATCCGAGTCAGGCCACTCTGCAACATTGGCGAGAC
GGAGTAGACTTAGAGGGGTACACCACTCTGCCGGCGGAGGTGGAGTTTTGTCCTGCCCCGGATTTCCGGCAAAGGGAGCA
TCCCAATTGCTCCTGGCTGAGGGTGGTGTTGTTTGAGGGACGCAACCGGCAAATTCGGCGGGTGGCGGAGCGTCTTGGGC
ATCCGGTGCTCAGCTTACATCGGGAGGCCATTGGCCCACTGGGCTTGGGCAACCTGAAAGCAGGCCAGTTCCGCCAGTTG
GATCCCCATGAGCTCCAAGCTTTGCTGGCCCCTCTCACCGGGCACAGCAGCTCATCCTCGCTCGGGAAGCGCCCTCTAAG
GCCTCCGGCCCGCTCACGCGATTAG

Upstream 100 bases:

>100_bases
CATCCTCTTTCCTCTATAAATTATTCCCTCTATCCTAACATAAGATCAACACGACCTAGCACCCCCAGCTTCGGTTGCTG
CTTTTGCTGTTCAAATCCCC

Downstream 100 bases:

>100_bases
CTCGTCAGAGCCTCTAACTGAGTGCAAACTCTCACAGTAGCCTCCTTTCTTCCGCAGGTGGCCAAATGATGCAAGAGCCA
GCACACTCTTTAGAAGCCCT

Product: RNA pseudouridine synthase family protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MAEPQRLQKLLAQQGLASRRQVEAWILAGRVRVNGKVVTELGSKADPERDCIEVNGQVIPLAKDPARYVLLLHKPVGVLS
TCADPWGRKTVLDLLPPSWKRQTRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKTYRVQVQGHPSQATLQHWRD
GVDLEGYTTLPAEVEFCPAPDFRQREHPNCSWLRVVLFEGRNRQIRRVAERLGHPVLSLHREAIGPLGLGNLKAGQFRQL
DPHELQALLAPLTGHSSSSSLGKRPLRPPARSRD

Sequences:

>Translated_274_residues
MAEPQRLQKLLAQQGLASRRQVEAWILAGRVRVNGKVVTELGSKADPERDCIEVNGQVIPLAKDPARYVLLLHKPVGVLS
TCADPWGRKTVLDLLPPSWKRQTRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKTYRVQVQGHPSQATLQHWRD
GVDLEGYTTLPAEVEFCPAPDFRQREHPNCSWLRVVLFEGRNRQIRRVAERLGHPVLSLHREAIGPLGLGNLKAGQFRQL
DPHELQALLAPLTGHSSSSSLGKRPLRPPARSRD
>Mature_273_residues
AEPQRLQKLLAQQGLASRRQVEAWILAGRVRVNGKVVTELGSKADPERDCIEVNGQVIPLAKDPARYVLLLHKPVGVLST
CADPWGRKTVLDLLPPSWKRQTRLYPVGRLDADSSGALLLTNDGDLTLKLTHPRYHLPKTYRVQVQGHPSQATLQHWRDG
VDLEGYTTLPAEVEFCPAPDFRQREHPNCSWLRVVLFEGRNRQIRRVAERLGHPVLSLHREAIGPLGLGNLKAGQFRQLD
PHELQALLAPLTGHSSSSSLGKRPLRPPARSRD

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081838, Length=180, Percent_Identity=42.2222222222222, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787524, Length=241, Percent_Identity=36.9294605809129, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1790453, Length=252, Percent_Identity=32.9365079365079, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788510, Length=249, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30638; Mature: 30506

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPQRLQKLLAQQGLASRRQVEAWILAGRVRVNGKVVTELGSKADPERDCIEVNGQVIP
CCCHHHHHHHHHHHCCHHHHHHEEEEEEEEEEECCEEEECCCCCCCCCCCCEEECCEEEE
LAKDPARYVLLLHKPVGVLSTCADPWGRKTVLDLLPPSWKRQTRLYPVGRLDADSSGALL
ECCCCCEEEEEEECCHHHHHHHCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCEEE
LTNDGDLTLKLTHPRYHLPKTYRVQVQGHPSQATLQHWRDGVDLEGYTTLPAEVEFCPAP
EECCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCEEECCCCEEECCCC
DFRQREHPNCSWLRVVLFEGRNRQIRRVAERLGHPVLSLHREAIGPLGLGNLKAGQFRQL
CCHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
DPHELQALLAPLTGHSSSSSLGKRPLRPPARSRD
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEPQRLQKLLAQQGLASRRQVEAWILAGRVRVNGKVVTELGSKADPERDCIEVNGQVIP
CCHHHHHHHHHHHCCHHHHHHEEEEEEEEEEECCEEEECCCCCCCCCCCCEEECCEEEE
LAKDPARYVLLLHKPVGVLSTCADPWGRKTVLDLLPPSWKRQTRLYPVGRLDADSSGALL
ECCCCCEEEEEEECCHHHHHHHCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCEEE
LTNDGDLTLKLTHPRYHLPKTYRVQVQGHPSQATLQHWRDGVDLEGYTTLPAEVEFCPAP
EECCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCEEECCCCEEECCCC
DFRQREHPNCSWLRVVLFEGRNRQIRRVAERLGHPVLSLHREAIGPLGLGNLKAGQFRQL
CCHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
DPHELQALLAPLTGHSSSSSLGKRPLRPPARSRD
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]