| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86607696
Identifier: 86607696
GI number: 86607696
Start: 208565
End: 209434
Strand: Reverse
Name: 86607696
Synonym: CYB_0195
Alternate gene names: NA
Gene position: 209434-208565 (Counterclockwise)
Preceding gene: 86607697
Following gene: 86607690
Centisome position: 6.87
GC content: 59.89
Gene sequence:
>870_bases ATGCAAGAGCCAGCACACTCTTTAGAAGCCCTGGGATCCCTGTTGCGGCAAACACGGGAGGCACGGGGACTGACGTTGAC AGAAGTAGCTAACGATACCTTCATTCGCTGCCAATATCTGCAGGCGCTGGAGGAAGCTGACTTGAGCCGGTTACCGGAGC CGGTGTATGTGCAAGGGTTTCTCAAGCGCTATGCCGACTATTTGGGGTTGGATGGCGAAACCCTCTCTCGGCGTGCTTCT CCGCTTTTATCGGCCAAAACGCCCCACGCGCCAGCTCCTCTTGCCGTTGTCGGCCAGCAACCTACCTTTGCCCTGCGTCC TCTCCACCTTTGGGCCGCTTATGTGGTGCTGATTGTGCTGACGGTGGGGGGATTGTCGGCTCTTTTGGAAGGCACAGGCA ATCCCTTTGGGCGTTGGCTGGTGAGCCTGTCAACGGTCAGTCGGGAGGGATCCGGCCAGCAACCGCCTGCTGCCAACTCC CCGGATCCCACTCTGTCGGCAGTTCAGCCCACGGCCCGCCAACTGTTTCCCACCCTCGACCAATGGACGCGCATTCAGGG CGTCTTCCCCGAGGTCTTGGATGCTCACTCAGGGGGGGCGGGGCGCAAGCCGGTGCGTCTGGATATTCGCGTTGTGGAGC GCCCTTCCTGGTTGCGGGTCATCGCCGATGGGCAAACGGTTTTTGAGGCCACCTTACAGCCAGGGGCCGAGTTGAATTGG GAAGCGGAGCAGTCAATCGTGTTGCGTACCGGCAATGCGGGCGGTGTGTTGGTGACCTTTAACGACCGGGAGCTTGGAGT GATGGGCCGATTTGGGGAAGTGAAAGAGCTGATGTTCGAGCCGGGGTTGGATATTCAGTCGCTGCAGTAG
Upstream 100 bases:
>100_bases CTCTAAGGCCTCCGGCCCGCTCACGCGATTAGCTCGTCAGAGCCTCTAACTGAGTGCAAACTCTCACAGTAGCCTCCTTT CTTCCGCAGGTGGCCAAATG
Downstream 100 bases:
>100_bases GAACCCAGCCAAATGATCATCCCGTTGCGCTTGGCGTTATCGGCGGCAGAGTAGGAGCAATCTCCCACCCTTGGGAGCCA AGCTGCTGCAGCAGGTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MQEPAHSLEALGSLLRQTREARGLTLTEVANDTFIRCQYLQALEEADLSRLPEPVYVQGFLKRYADYLGLDGETLSRRAS PLLSAKTPHAPAPLAVVGQQPTFALRPLHLWAAYVVLIVLTVGGLSALLEGTGNPFGRWLVSLSTVSREGSGQQPPAANS PDPTLSAVQPTARQLFPTLDQWTRIQGVFPEVLDAHSGGAGRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNW EAEQSIVLRTGNAGGVLVTFNDRELGVMGRFGEVKELMFEPGLDIQSLQ
Sequences:
>Translated_289_residues MQEPAHSLEALGSLLRQTREARGLTLTEVANDTFIRCQYLQALEEADLSRLPEPVYVQGFLKRYADYLGLDGETLSRRAS PLLSAKTPHAPAPLAVVGQQPTFALRPLHLWAAYVVLIVLTVGGLSALLEGTGNPFGRWLVSLSTVSREGSGQQPPAANS PDPTLSAVQPTARQLFPTLDQWTRIQGVFPEVLDAHSGGAGRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNW EAEQSIVLRTGNAGGVLVTFNDRELGVMGRFGEVKELMFEPGLDIQSLQ >Mature_289_residues MQEPAHSLEALGSLLRQTREARGLTLTEVANDTFIRCQYLQALEEADLSRLPEPVYVQGFLKRYADYLGLDGETLSRRAS PLLSAKTPHAPAPLAVVGQQPTFALRPLHLWAAYVVLIVLTVGGLSALLEGTGNPFGRWLVSLSTVSREGSGQQPPAANS PDPTLSAVQPTARQLFPTLDQWTRIQGVFPEVLDAHSGGAGRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNW EAEQSIVLRTGNAGGVLVTFNDRELGVMGRFGEVKELMFEPGLDIQSLQ
Specific function: Unknown
COG id: COG1426
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31467; Mature: 31467
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEPAHSLEALGSLLRQTREARGLTLTEVANDTFIRCQYLQALEEADLSRLPEPVYVQGF CCCHHHHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH LKRYADYLGLDGETLSRRASPLLSAKTPHAPAPLAVVGQQPTFALRPLHLWAAYVVLIVL HHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHH TVGGLSALLEGTGNPFGRWLVSLSTVSREGSGQQPPAANSPDPTLSAVQPTARQLFPTLD HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH QWTRIQGVFPEVLDAHSGGAGRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNW HHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEHHHCCCCCCCCC EAEQSIVLRTGNAGGVLVTFNDRELGVMGRFGEVKELMFEPGLDIQSLQ CCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MQEPAHSLEALGSLLRQTREARGLTLTEVANDTFIRCQYLQALEEADLSRLPEPVYVQGF CCCHHHHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH LKRYADYLGLDGETLSRRASPLLSAKTPHAPAPLAVVGQQPTFALRPLHLWAAYVVLIVL HHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHH TVGGLSALLEGTGNPFGRWLVSLSTVSREGSGQQPPAANSPDPTLSAVQPTARQLFPTLD HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH QWTRIQGVFPEVLDAHSGGAGRKPVRLDIRVVERPSWLRVIADGQTVFEATLQPGAELNW HHHHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEHHHCCCCCCCCC EAEQSIVLRTGNAGGVLVTFNDRELGVMGRFGEVKELMFEPGLDIQSLQ CCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA