| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607649
Identifier: 86607649
GI number: 86607649
Start: 163678
End: 164529
Strand: Reverse
Name: 86607649
Synonym: CYB_0146
Alternate gene names: NA
Gene position: 164529-163678 (Counterclockwise)
Preceding gene: 86607654
Following gene: 86607638
Centisome position: 5.4
GC content: 62.32
Gene sequence:
>852_bases ATGCGGCGGCGCATTCTACAGCTTTGCATCCTCGGCTGGACGATGCTCCTCGTCCTGGCAGTGGGGGGCAGGGGATCCCT GCCGGTTCCCCACTTTTTTGGCATTGAAGCCCTGCAAGCCCAGGCTCAAACTCAAGCCGGAGAACTGCCGCAGCCGATGC GGCTCAAACTTCCCCCCGGCCTGGATCGCTACGCCTACGACAAGGCGGTGGGAGACTACTTTGAGGAAATCGAGCCGCTT TTGCCAGGTGGAGCCTATGCCCAGTGGGCCTTCTATCCCGTCCCTATCTACATCCAAGGGGATCACCCCCAGTGGAAGGC CTCCGTGGAGCAAGCGGTGAAGGAGTGGTCGGCCTACATCCCGCTCAAGGTGGTGGCCAAAGAGGAGGAGGCTTTCTACG GGATGAGCATTTACCGCGTTCCTCCTATTGGCGGCGGGGTGGCTGGGGCGGCCCGCCCGGAGTTTTTCTTCGCCTCCGAT GGCTCTTTGCAGCAGCGGGTGCGCATCGTCATTGCAGAAGGACAGGGGTTGGCCGAAATAACGGCGGTGGCCCGACACGA GATCGGGCATGGGCTGGGGCTGTGGGGCCATAGCCCGAACCTGCGGGATCTGATGTATGGCGGACACCATGCGGCGGCTA CCGGCAATCGGCGGGTGTTGCGGGTGCCCAACATTACCAAGCGGGATCTCAACACCCTCAAGCGCGTCTACGAGCAGCCC ACCCTCAGCGGGCAGGTCTTTCCAGAGAGCTATCGCCGCCTGTTTGGCCAGCTTCTGCAGGAAAAGCCGCTGCCCGAGAG AGCTCTTGGATTGCCGCTAGCTAGAGCTGCAGGAGTTGCGACACCCCCTTGA
Upstream 100 bases:
>100_bases GGAATCTCCAGCCTTCAGGCCGGGGAGGATGTCAAACGAACGACACTTGCTTTCTGAGCCACTAACCTTGTAGAAAGACA AGGGCGAAAGGGCGGCTTTG
Downstream 100 bases:
>100_bases GCGCCATAGCTAGGAGAAAAAAGAGCAACTGGGTGGCAACAATGCTGGGGCCGGAGGGCAGGTTGAAGGTTGCCGAGGCG ATCATCCCCAGCACCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase; Zn-Dependent Protease
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPGLDRYAYDKAVGDYFEEIEPL LPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYIPLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASD GSLQQRVRIVIAEGQGLAEITAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQP TLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP
Sequences:
>Translated_283_residues MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPGLDRYAYDKAVGDYFEEIEPL LPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYIPLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASD GSLQQRVRIVIAEGQGLAEITAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQP TLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP >Mature_283_residues MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPGLDRYAYDKAVGDYFEEIEPL LPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYIPLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASD GSLQQRVRIVIAEGQGLAEITAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQP TLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP
Specific function: Unknown
COG id: COG5549
COG function: function code O; Predicted Zn-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31224; Mature: 31224
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPG CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC LDRYAYDKAVGDYFEEIEPLLPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYI CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCC PLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASDGSLQQRVRIVIAEGQGLAEI CEEEEEECCCCEECEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCHHHH TAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQP HHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHCC TLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP CCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCC >Mature Secondary Structure MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPG CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC LDRYAYDKAVGDYFEEIEPLLPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYI CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCC PLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASDGSLQQRVRIVIAEGQGLAEI CEEEEEECCCCEECEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCHHHH TAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQP HHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHCC TLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP CCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA