| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607654
Identifier: 86607654
GI number: 86607654
Start: 167037
End: 168230
Strand: Reverse
Name: 86607654
Synonym: CYB_0152
Alternate gene names: NA
Gene position: 168230-167037 (Counterclockwise)
Preceding gene: 86607655
Following gene: 86607649
Centisome position: 5.52
GC content: 62.9
Gene sequence:
>1194_bases ATGCCCGATTCCCCTTCTGCCCTGCGCTTTATTGTTTTGCTGGGGATCGTCAGCCTCTGCGCCGATGCCACCTACGAAGG GGCACGCAGCATTTCTGGAGCTTTTTTGGGATCCCTAGGGGCCAGCGGCACGGTGGTGGGCCTGGTGGCCGGCGGGGGGG AGCTATTGGCCTATGGCTTGCGGTTGGGGGTGGGCTATTGGAGCGACCAGCTGGGCAGGGATCCCTTGCACCGCAGTCGG GGGCACTGGCAGCTCACCACCTTGGGCTATGTCATCAACACGGCGGTGATCCCGGCTTTGGCCTGGGTGGGCAGTTGGCC TTGGGCCGCCGTGCTGCTCTTGGCCGAGCGGACCGGCAAAGGGATCCGCACCCCGCCGCGGGACGTGTTGCTTTCTCATG CAGCCCTGCAGGTGGGACGGGGCTTGGGGTTTGGCCTGCATGAGACCCTAGATCAAATTGGGGCAGTGGCAGGGCCGCTG CTGGTGGCAGCCATGCTAGGAGCGGGATATGGCTTCCGGGGCGCGTTTTTGGCCTTGGGGATCCCGGCGGCAATAGGACT GGGGGTTTTGGGGCTGGCGCAATGGCTCTATCCCAGCCCACGAGACTTCGAGCCGGAGCCGGAGATGACCTCGGCAAAAG GCTTGCCCAGAGTTTTCTGGCTGTATCTTTTGGCAGCAGCCTGTGTGGCTATGGGGTTTGCGGATTTTCCCCTCATTGCC CTGCATCTGCAACAACAGTCAGGGAGCGATGGGGCAGGGATCCCTTTGCTCTATGCCCTGGCCATGGGGGTGGATGCCCT GGCCGCCCTGGGATGTGGCTGGCTGTTTGACCGCGTGGGGCTGTGGAGCTTGCTGGGAGCGGTGGCGGTATCGGCTGGAT TTGCGCCGCTGGCCTTTTCCGGTACCTATGCTCTGACGGTGCTGGGCATGGTGCTCTGGGGCATTGGCTTGGGGGCCCAA GAATCCATCATGAAGGCGGCGGTGGCCGGTATGGTAGCTCCCGAGACGAGGGGCTTTGCCTTTGGCCTGTTTACCAGTGT CTATGGATTGGCTTGGTTTGTGGGCAGCGCCCTGATGGGGGTGCTTTACGATTTCTCCCTGACTGGCTTAGTGCTCTTTT CGGTAGTCACTCAAGGGCTGGGGGCGGCTATCCTGCTGGCTCTAGTGTCCAGGAGGCAGGCCGAGGTGGGCTGA
Upstream 100 bases:
>100_bases TCTAGTTACTTGCCATAGGGTACAAGTATTCCATCATGTTCCTCATCAACAACAATAGTCCAGATCTGAAAATAGATTCC CCATTGCCAAGGAGCTGGTT
Downstream 100 bases:
>100_bases TGAAAAGCCCCTGCACCAGATTACGGTGCAGCTCTTCGGGGGTTTCGTTTGTGCTAGTGGTGAGGAGCACCATCCCCTCA GGTTTTGGGCCACCTCCAGG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MPDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGLRLGVGYWSDQLGRDPLHRSR GHWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGKGIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPL LVAAMLGAGYGFRGAFLALGIPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIA LHLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFSGTYALTVLGMVLWGIGLGAQ ESIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMGVLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG
Sequences:
>Translated_397_residues MPDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGLRLGVGYWSDQLGRDPLHRSR GHWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGKGIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPL LVAAMLGAGYGFRGAFLALGIPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIA LHLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFSGTYALTVLGMVLWGIGLGAQ ESIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMGVLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG >Mature_396_residues PDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGLRLGVGYWSDQLGRDPLHRSRG HWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGKGIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPLL VAAMLGAGYGFRGAFLALGIPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIAL HLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFSGTYALTVLGMVLWGIGLGAQE SIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMGVLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41019; Mature: 40887
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGL CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH RLGVGYWSDQLGRDPLHRSRGHWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGK HHCCCHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC GIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPLLVAAMLGAGYGFRGAFLALG CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH IPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE LHLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFS EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC GTYALTVLGMVLWGIGLGAQESIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMG CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGL CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH RLGVGYWSDQLGRDPLHRSRGHWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGK HHCCCHHHHHCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC GIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPLLVAAMLGAGYGFRGAFLALG CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH IPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE LHLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFS EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC GTYALTVLGMVLWGIGLGAQESIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMG CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]