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The map label for this gene is psbU [H]

Identifier: 86607638

GI number: 86607638

Start: 149363

End: 149767

Strand: Reverse

Name: psbU [H]

Synonym: CYB_0136

Alternate gene names: 86607638

Gene position: 149767-149363 (Counterclockwise)

Preceding gene: 86607649

Following gene: 86607637

Centisome position: 4.92

GC content: 54.32

Gene sequence:

>405_bases
ATGAGCCTTTTGGATTCTGCTTGGAGAAGTGATGCTATGCGTTGGCTGCTGTCCATCTTGGTTCGTGTGGTGTTAGTGCT
CTGTCTGTGCTTCGCTCCTTTGGGGATCCCTGTTGTGGCCAGGGCCGCAGAGCTTCCCCCGGTAAAGCACTTGGACACTC
CGATTGACGTGAACAACACCATCTTGCGCAACTACCGCCAACTGCCCGGCTTCTATCCCACCCTGGCTCGCATCCTGGTG
AAAAATGCCCCCTACAAGAGCCTGGAAGACATGTTGCAGATCTCAGGCCTGACAGAGCAGCAAAAGGCCTTGATCAAAGC
CAACGCCGAGAACTTCGTGTTTGGCGAGTATCAGGAAGGGGCTAACCAACTGGAAAACCGCATCAACCAAGGGTACTACG
GCTGA

Upstream 100 bases:

>100_bases
AAAATTGTTTCTGTCGGGATCCAAATCCTGTCTTGGCCCTCGATTCGGGGTGGAGGGGATGAGACACTAGATGGTCGGAG
AATGTTAGCAACCTATACAG

Downstream 100 bases:

>100_bases
TCTCGGCAGAGGGGCCATCGGGAGAATCGGCTTTTGTAGGAAAGGGATCCTGTGGCCTACGATAACGTCTGCAAGTACTT
GGTGGAATGGTTCCCCGAGT

Product: photosystem II complex extrinsic protein precursor U

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSLLDSAWRSDAMRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILV
KNAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG

Sequences:

>Translated_134_residues
MSLLDSAWRSDAMRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILV
KNAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG
>Mature_133_residues
SLLDSAWRSDAMRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILVK
NAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010527 [H]

Pfam domain/function: PF06514 PsbU [H]

EC number: NA

Molecular weight: Translated: 15105; Mature: 14974

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLDSAWRSDAMRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHH
ILRNYRQLPGFYPTLARILVKNAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEG
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHH
ANQLENRINQGYYG
HHHHHHHHHCCCCC
>Mature Secondary Structure 
SLLDSAWRSDAMRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHH
ILRNYRQLPGFYPTLARILVKNAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEG
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHH
ANQLENRINQGYYG
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA