Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
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Accession | NC_007766 |
Length | 642,517 |
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The map label for this gene is 86360914
Identifier: 86360914
GI number: 86360914
Start: 193954
End: 194733
Strand: Reverse
Name: 86360914
Synonym: RHE_PF00183
Alternate gene names: NA
Gene position: 194733-193954 (Counterclockwise)
Preceding gene: 86360915
Following gene: 86360913
Centisome position: 30.31
GC content: 65.9
Gene sequence:
>780_bases ATGCCCGCAGCAATCGAAATCATTGCCGCCGGCCGGCGGCCACGGCTGGACGACCGGCCGCTCGAAAAGCGCATCGGCCT GATCATCCTGGCGACGGATCACACGACCGAAGTCGACTTCCGGGGCATGGTCGCCGGCGACCGCATCGGTGTCTATGTCA GCCGCATCCATTATGCCAACCCGGTGACACCGGAAAACCTCACGAAGATGCAGCCGTCGCTGACGGAAGGCGCAGGGCTG ATCCTGCCGGGTGAGGCGCTCGATGCCGTCATGTATTCCTGCACCTCCGCGTCAGTCGTCATCGGCGACCGCAATATCGA GGAGGCGATCCACGCCTCCAAACCCGGTACTGCCGTGGTAACGCCGACGGCGGCGGCGGTGAGGGGCCTGAAGGCGCTCG GCGCCCGCCGGATTTCGGTGCTGACGCCTTATACGATCGAGACCAGCCGGCCGATGGCGGATTATTTCGCAGCTCTCGGC TTTGCGATCGACCGCTTCACCTGCCTTGGCCTGAGCGACGACCGCGAGATGGCTCGTATCGCGCCGGATGAGATCGCGGC CTTCGCGCGTGAGGCGCTGGCGCCGCAGTCCGAAGCGCTGTTCATCTCCTGCACTGCTCTGCGCGCCGCACAGGTCGCCG CCCGCATCGAAGGCGAGACCGGCAAGCCTGTGGTGACCAGCAATCTCGCAACCGCCTGGGCCTGCCTAAGGCTTTGCGGC GATGATCGGGCGCGGCCCGAGCTCGGTCAGCTGATGACGATGCCCTATGGGGAAGGCTGA
Upstream 100 bases:
>100_bases CCGATGACGCTCGTCGGCGTCTTCTTCCTCGTCATCAGCCTGGTCTCGGTGGTGGGCTTGCGCTGGCTCGAGGAGCGCTA CGCCAGGATGGATGACTGAG
Downstream 100 bases:
>100_bases GATCATGGTGAGCAGCTTGCCGGTTTCGCTGGAGGATATTCGCGCAGCGGCGCGGCGGATCGCCGGCTGGGTCGTCGAAA CACCGATGGTGCTGTCGGCA
Product: putative arylmalonate decarboxylase protein
Products: NA
Alternate protein names: Asp/Glu/Hydantoin Racemase; Arylmalonate Decarboxylase; Decarboxylase; Asp/Glu/Hydantoin Racemase Family Protein; Maleate Cis-Trans Isomerase; Ectoine Utilization Protein EutA; Arylmalonate Decarboxylase Protein; Asp/Glu/Hydantoin Racemase Family; Asp/Glu/Hydantoin Racemase Superfamily; Racemase; Maleate Cis-Trans Isomerase-Like Protein; Isomerase; Pyridoxal-5-Phosphate-Dependent Beta Subunit
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPAAIEIIAAGRRPRLDDRPLEKRIGLIILATDHTTEVDFRGMVAGDRIGVYVSRIHYANPVTPENLTKMQPSLTEGAGL ILPGEALDAVMYSCTSASVVIGDRNIEEAIHASKPGTAVVTPTAAAVRGLKALGARRISVLTPYTIETSRPMADYFAALG FAIDRFTCLGLSDDREMARIAPDEIAAFAREALAPQSEALFISCTALRAAQVAARIEGETGKPVVTSNLATAWACLRLCG DDRARPELGQLMTMPYGEG
Sequences:
>Translated_259_residues MPAAIEIIAAGRRPRLDDRPLEKRIGLIILATDHTTEVDFRGMVAGDRIGVYVSRIHYANPVTPENLTKMQPSLTEGAGL ILPGEALDAVMYSCTSASVVIGDRNIEEAIHASKPGTAVVTPTAAAVRGLKALGARRISVLTPYTIETSRPMADYFAALG FAIDRFTCLGLSDDREMARIAPDEIAAFAREALAPQSEALFISCTALRAAQVAARIEGETGKPVVTSNLATAWACLRLCG DDRARPELGQLMTMPYGEG >Mature_258_residues PAAIEIIAAGRRPRLDDRPLEKRIGLIILATDHTTEVDFRGMVAGDRIGVYVSRIHYANPVTPENLTKMQPSLTEGAGLI LPGEALDAVMYSCTSASVVIGDRNIEEAIHASKPGTAVVTPTAAAVRGLKALGARRISVLTPYTIETSRPMADYFAALGF AIDRFTCLGLSDDREMARIAPDEIAAFAREALAPQSEALFISCTALRAAQVAARIEGETGKPVVTSNLATAWACLRLCGD DRARPELGQLMTMPYGEG
Specific function: Unknown
COG id: COG3473
COG function: function code Q; Maleate cis-trans isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27639; Mature: 27508
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAIEIIAAGRRPRLDDRPLEKRIGLIILATDHTTEVDFRGMVAGDRIGVYVSRIHYAN CCCEEEEEECCCCCCCCCCCHHHHCCEEEEEECCCCCCCEEEEECCCHHEEEEEEEECCC PVTPENLTKMQPSLTEGAGLILPGEALDAVMYSCTSASVVIGDRNIEEAIHASKPGTAVV CCCCCHHHHCCCCCCCCCCEEECHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEE TPTAAAVRGLKALGARRISVLTPYTIETSRPMADYFAALGFAIDRFTCLGLSDDREMARI CCHHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHC APDEIAAFAREALAPQSEALFISCTALRAAQVAARIEGETGKPVVTSNLATAWACLRLCG CHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHC DDRARPELGQLMTMPYGEG CCCCCCCHHHEEECCCCCC >Mature Secondary Structure PAAIEIIAAGRRPRLDDRPLEKRIGLIILATDHTTEVDFRGMVAGDRIGVYVSRIHYAN CCEEEEEECCCCCCCCCCCHHHHCCEEEEEECCCCCCCEEEEECCCHHEEEEEEEECCC PVTPENLTKMQPSLTEGAGLILPGEALDAVMYSCTSASVVIGDRNIEEAIHASKPGTAVV CCCCCHHHHCCCCCCCCCCEEECHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEE TPTAAAVRGLKALGARRISVLTPYTIETSRPMADYFAALGFAIDRFTCLGLSDDREMARI CCHHHHHHHHHHHCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHC APDEIAAFAREALAPQSEALFISCTALRAAQVAARIEGETGKPVVTSNLATAWACLRLCG CHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHC DDRARPELGQLMTMPYGEG CCCCCCCHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA