| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is prsA [H]
Identifier: 85859367
GI number: 85859367
Start: 1565345
End: 1566439
Strand: Direct
Name: prsA [H]
Synonym: SYN_03141
Alternate gene names: 85859367
Gene position: 1565345-1566439 (Clockwise)
Preceding gene: 85859366
Following gene: 85859370
Centisome position: 49.24
GC content: 47.67
Gene sequence:
>1095_bases ATGGCATCACCGAAAAACAGTTGGGTCCTAAAGGGCTTTTTTTCAACATTATTTGTTCTGATCTGTCTGCTTGCATTCCT TCTGACAGCATGTCAAAAAAATGATCAACAGGGTACGGCTTCCAAAGAAGAAACCGCTCCGACAGCCTCTGTTCCCCAGA CGGCAACGCCCGCGGAAGGGGCCGAAAAGGCCTTGGGTCCTGGCGATCCGGTCATTGAGGTTGACGGGGTAAAAATGACC AAGGGGCAATTGGATACGGAAGTGAACCGCAAACTGGAGTCTATCAGAAAGAGGGTTCCAGCCGAAAAGTTGCCTCAGGT AAAAACAAATATCCAGAAACGCCTCATCGATGATTTTGTGGTGAAAACCCTGCTGAACAACGAGGTCAATCGTCTTAAAA TCACCGCAACAGAACAGGAAGTCAATGAAGCGGTTGAAAAACTGAAATCATCTCTTCCCGCAAATGTAAGTTTGGAGAAT CTACTTAAAAAGAATCAGATGACCAGAGAAAAAATGCGTGAAGAGATCCGGCTGGGCATACAGATCAACAAGCTCATGGT CTCACGGACAAAGAACTTGCCCAAACCTACCGAAAAGGAAATAACCTCTTTTTACAAAAAAAATCAGGATCGGTTTAAAC TGCCCGAGGCAGTGCATGTCCGTCATATCCTGATTGCCAGGGCGCCAGATGACGGAGAGAAGGTTATTGCCGAGAAGAAG GCCAAAGCTGAAGGGCTGCGGAAGAAGATCCTGGCAGGTGCTGATTTCGCTGAACTTGCGAAAAGCAATTCCGACTGTCC AAGTAAAAGTGCGGGGGGCGACCTCGGGATCGTTTCGAGGGGACAAATGGTCAAACCCTTTGAAGACGCGATCTTCTCTT TGAAAAAGAATCAAATCGGTCCAGTGGTGCAGACGGAATACGGCTTTCATGTGGTCCAGGTTCTGGATGTGCGGCAGCCC AAGACTGTGGCGTTGGATGAAAGAACAAAGGGCATGATTTCTTCATTTCTCTTGCAGCAGAAACAGCAGGAAGCGTTCAG AAAAATGGTCGCGTCCCTGAAAGAAAAGGCGAACATTATCGCCTACATGCCTTAG
Upstream 100 bases:
>100_bases CCCCGCCACTCGCTTGAATCAATCTGACAGTATGATTTCCCTGCAGTCTGAGGAGGGAAAGACAGATCCAGGAGCAAAAG TAATTTAAAGAGGAGAATTT
Downstream 100 bases:
>100_bases AACAATAAAGAAGGGTAAACAACGGGATATCAAAGTCCAGGCGGCGGCGATGTCCCGTTGTTGTTTTTCCCGGAACCCTT CCTCCTTCCCTGCCGATTCA
Product: peptidylprolyl isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MASPKNSWVLKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEGAEKALGPGDPVIEVDGVKMT KGQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFVVKTLLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSLEN LLKKNQMTREKMREEIRLGIQINKLMVSRTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKK AKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIGPVVQTEYGFHVVQVLDVRQP KTVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANIIAYMP
Sequences:
>Translated_364_residues MASPKNSWVLKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEGAEKALGPGDPVIEVDGVKMT KGQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFVVKTLLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSLEN LLKKNQMTREKMREEIRLGIQINKLMVSRTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKK AKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIGPVVQTEYGFHVVQVLDVRQP KTVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANIIAYMP >Mature_363_residues ASPKNSWVLKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEGAEKALGPGDPVIEVDGVKMTK GQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFVVKTLLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSLENL LKKNQMTREKMREEIRLGIQINKLMVSRTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKKA KAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIGPVVQTEYGFHVVQVLDVRQPK TVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANIIAYMP
Specific function: Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins [H]
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PpiC domain [H]
Homologues:
Organism=Homo sapiens, GI5453898, Length=108, Percent_Identity=40.7407407407407, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1790211, Length=70, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI17647355, Length=108, Percent_Identity=41.6666666666667, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023059 - InterPro: IPR000297 - InterPro: IPR023058 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 40490; Mature: 40358
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASPKNSWVLKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCH AEKALGPGDPVIEVDGVKMTKGQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFV HHHCCCCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH VKTLLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSLENLLKKNQMTREKMREEIRLGI HHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH QINKLMVSRTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKK HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHEEEECCCCHHHHHHHHH AKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIG HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC PVVQTEYGFHVVQVLDVRQPKTVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANII CEEECCCCCEEEHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE AYMP EECC >Mature Secondary Structure ASPKNSWVLKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCH AEKALGPGDPVIEVDGVKMTKGQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFV HHHCCCCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH VKTLLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSLENLLKKNQMTREKMREEIRLGI HHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCH QINKLMVSRTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKK HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHEEEECCCCHHHHHHHHH AKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIG HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC PVVQTEYGFHVVQVLDVRQPKTVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANII CEEECCCCCEEEHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE AYMP EECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]