| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859366
Identifier: 85859366
GI number: 85859366
Start: 1563797
End: 1565179
Strand: Direct
Name: 85859366
Synonym: SYN_01970
Alternate gene names: NA
Gene position: 1563797-1565179 (Clockwise)
Preceding gene: 85859365
Following gene: 85859367
Centisome position: 49.19
GC content: 53.29
Gene sequence:
>1383_bases ATGACCCTGGCACGGAACGTTTCTGATTATTTGCGCAAATGCCGTTTGGAGGTCGCGCCTTCCCTCATTTCCGGTTCCGA TTCGTTCCGGAATCTATCACAGGTGGTGGTCATCCCGGCCCTTGCTGAAAAGCGTCATCTCTTTAAGACACTGGCAAGTC TGGCACGGAATGATCCGAAAGAACTGGAGCGGACCCTGATCATCTGTGTGATCAATAACCGTCCCTTTCCCTTTGTAAGC GGGGAAGCTCTGCAGAATAACCAGGAAACCCTTGCGATTCTTGAGGACCTGACTGCAGGCCGACGCCCTTCCGCAGAGAA AAACAATGCAGATTCGAGAGAATCGTTCAGAGAGATTCTTCAAAGTCGATTGCGTCTGGCTTATCTGGATGCCTCGTCGG CGGGGCAGGGAATGCCCGTAAAGCAGGGTGGGGTGGGTCTGGCCAGGAAAATGGGCCTGGATGCCGGACTGGCGGTTATG GACCATGAAAAATCCGGGGACGGAAGGTTGCTTTGTCTTGATGCGGACTCCCCGGTCGCCGAAAATTACTTTTCCGCAAT CCGACAATTTTATGAAAGCCATAACTCCGATGCCGCCGTGGTGTCTTATGCCCATCCTTTTCCCGACGACCCGTTGCTGC TCGCCGCCATCTGCAATTATGAAATCTTCCTGAGGTATTACGTCCTCGGGTTGAACTATGCGGAATCCCCCTACGCCTTT CATACAGTCGGTTCGACCATGAGCTGCACGGCCCGGGGCTACGTGGCCGTCCGCGGGATGAACCGACGCGAGGCGGGCGA GGATTTCTACTTTTTGAACAAACTGGCCAAGCTGTCCCCTATGGGAAAAATTACCAGGACGCGGGTCTATCCGTCTTCCC GCCCTTCCCGGAGGGTGCCTTTCGGTACGGGAAGGCGGATGAGCGATTGTCTTGAAGGAAGGGATCGGAAAGACGTCTTT TATGATCCGCGGGTTTTTTCTGTCCTGAAGAAGTGGCAGAAGGAAATGAGGGACTGCATCGCCGAAGGTGGAAACTTCAT GCTGAAACTGGCCGGAGACATTTCGCCGCATCTCGTTTTCTTTCTGGAGGCCGTCAATTTTCCTTCAGCCTGGGACAGGA TATGCCGAACGCACAAAAATCCGGAAAAAAGGGCATGGCACTTTCAAGAGTGGTTTGACGCCTTTCAAACATTGAAGCTG ATTCATTATCTGACGAAGGTCTCCTGTCCCGCTGTGGAACTGTGGCAGGCCGTGCCGATACTGCTGGAATGGGCTGAACA GCCTGTTCCTGAATCTCTCAGGGTCTTTCATTCCGGAAATTCTCCGGGACTTGCGGAACATATTGAACTTCTACAGCATC TGCGCGACATAGAACAGGGGTGA
Upstream 100 bases:
>100_bases CATGGTTTCGACGCATGGAACGCCATGGCATCGAAATTATCTGGATCGAGGGGGATGATTACGAAGCATTGAAAGAACAG TTAAAGGGGAATCTGCGATC
Downstream 100 bases:
>100_bases GGGGAAAATCGTCCTGAATTATTTTCTAATATATCCTTGACGTTTACTGTCATTTTCCCTATACTCCCCGCCACTCGCTT GAATCAATCTGACAGTATGA
Product: cytoplasmic protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 460; Mature: 459
Protein sequence:
>460_residues MTLARNVSDYLRKCRLEVAPSLISGSDSFRNLSQVVVIPALAEKRHLFKTLASLARNDPKELERTLIICVINNRPFPFVS GEALQNNQETLAILEDLTAGRRPSAEKNNADSRESFREILQSRLRLAYLDASSAGQGMPVKQGGVGLARKMGLDAGLAVM DHEKSGDGRLLCLDADSPVAENYFSAIRQFYESHNSDAAVVSYAHPFPDDPLLLAAICNYEIFLRYYVLGLNYAESPYAF HTVGSTMSCTARGYVAVRGMNRREAGEDFYFLNKLAKLSPMGKITRTRVYPSSRPSRRVPFGTGRRMSDCLEGRDRKDVF YDPRVFSVLKKWQKEMRDCIAEGGNFMLKLAGDISPHLVFFLEAVNFPSAWDRICRTHKNPEKRAWHFQEWFDAFQTLKL IHYLTKVSCPAVELWQAVPILLEWAEQPVPESLRVFHSGNSPGLAEHIELLQHLRDIEQG
Sequences:
>Translated_460_residues MTLARNVSDYLRKCRLEVAPSLISGSDSFRNLSQVVVIPALAEKRHLFKTLASLARNDPKELERTLIICVINNRPFPFVS GEALQNNQETLAILEDLTAGRRPSAEKNNADSRESFREILQSRLRLAYLDASSAGQGMPVKQGGVGLARKMGLDAGLAVM DHEKSGDGRLLCLDADSPVAENYFSAIRQFYESHNSDAAVVSYAHPFPDDPLLLAAICNYEIFLRYYVLGLNYAESPYAF HTVGSTMSCTARGYVAVRGMNRREAGEDFYFLNKLAKLSPMGKITRTRVYPSSRPSRRVPFGTGRRMSDCLEGRDRKDVF YDPRVFSVLKKWQKEMRDCIAEGGNFMLKLAGDISPHLVFFLEAVNFPSAWDRICRTHKNPEKRAWHFQEWFDAFQTLKL IHYLTKVSCPAVELWQAVPILLEWAEQPVPESLRVFHSGNSPGLAEHIELLQHLRDIEQG >Mature_459_residues TLARNVSDYLRKCRLEVAPSLISGSDSFRNLSQVVVIPALAEKRHLFKTLASLARNDPKELERTLIICVINNRPFPFVSG EALQNNQETLAILEDLTAGRRPSAEKNNADSRESFREILQSRLRLAYLDASSAGQGMPVKQGGVGLARKMGLDAGLAVMD HEKSGDGRLLCLDADSPVAENYFSAIRQFYESHNSDAAVVSYAHPFPDDPLLLAAICNYEIFLRYYVLGLNYAESPYAFH TVGSTMSCTARGYVAVRGMNRREAGEDFYFLNKLAKLSPMGKITRTRVYPSSRPSRRVPFGTGRRMSDCLEGRDRKDVFY DPRVFSVLKKWQKEMRDCIAEGGNFMLKLAGDISPHLVFFLEAVNFPSAWDRICRTHKNPEKRAWHFQEWFDAFQTLKLI HYLTKVSCPAVELWQAVPILLEWAEQPVPESLRVFHSGNSPGLAEHIELLQHLRDIEQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51979; Mature: 51848
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLARNVSDYLRKCRLEVAPSLISGSDSFRNLSQVVVIPALAEKRHLFKTLASLARNDPK CCCCCCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCHH ELERTLIICVINNRPFPFVSGEALQNNQETLAILEDLTAGRRPSAEKNNADSRESFREIL HHHCEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH QSRLRLAYLDASSAGQGMPVKQGGVGLARKMGLDAGLAVMDHEKSGDGRLLCLDADSPVA HHHHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCHH ENYFSAIRQFYESHNSDAAVVSYAHPFPDDPLLLAAICNYEIFLRYYVLGLNYAESPYAF HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE HTVGSTMSCTARGYVAVRGMNRREAGEDFYFLNKLAKLSPMGKITRTRVYPSSRPSRRVP EECCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCCCCC FGTGRRMSDCLEGRDRKDVFYDPRVFSVLKKWQKEMRDCIAEGGNFMLKLAGDISPHLVF CCCCCHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH FLEAVNFPSAWDRICRTHKNPEKRAWHFQEWFDAFQTLKLIHYLTKVSCPAVELWQAVPI HHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LLEWAEQPVPESLRVFHSGNSPGLAEHIELLQHLRDIEQG HHHHHCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLARNVSDYLRKCRLEVAPSLISGSDSFRNLSQVVVIPALAEKRHLFKTLASLARNDPK CCCCCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCHH ELERTLIICVINNRPFPFVSGEALQNNQETLAILEDLTAGRRPSAEKNNADSRESFREIL HHHCEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH QSRLRLAYLDASSAGQGMPVKQGGVGLARKMGLDAGLAVMDHEKSGDGRLLCLDADSPVA HHHHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCHH ENYFSAIRQFYESHNSDAAVVSYAHPFPDDPLLLAAICNYEIFLRYYVLGLNYAESPYAF HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE HTVGSTMSCTARGYVAVRGMNRREAGEDFYFLNKLAKLSPMGKITRTRVYPSSRPSRRVP EECCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCCCCC FGTGRRMSDCLEGRDRKDVFYDPRVFSVLKKWQKEMRDCIAEGGNFMLKLAGDISPHLVF CCCCCHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH FLEAVNFPSAWDRICRTHKNPEKRAWHFQEWFDAFQTLKLIHYLTKVSCPAVELWQAVPI HHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LLEWAEQPVPESLRVFHSGNSPGLAEHIELLQHLRDIEQG HHHHHCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA