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The map label for this gene is rlpA [C]

Identifier: 84625392

GI number: 84625392

Start: 4222643

End: 4224058

Strand: Reverse

Name: rlpA [C]

Synonym: XOO_3735

Alternate gene names: 84625392

Gene position: 4224058-4222643 (Counterclockwise)

Preceding gene: 84625393

Following gene: 84625391

Centisome position: 85.5

GC content: 67.37

Gene sequence:

>1416_bases
ATGAACAGCATTGCAGGCCCCAAGTGGCTGATTCCGATGGCACTGATGCTCAGCCTTGCGGCCTGCAGCAGCGCACCGAA
GAAGACCGCCGGTAGCAACGGCAGCGGCGCGATCAAGGGCGTCAAGGTCGAAGGCAAGGGGCCGGCATATGTCGCCACCG
GCTGCCCGTCTACCTCGCCGTATGCGCCAGCCAAGGAAGACCCGTCCACGCGCGGCGATTACACCGCTGGCGGCTTGTAC
AAGCCGGGTGTGAAAGACACCACGCCCGATGATGTGCCCAATGTGGCCTGCATTCCCGAACCGCTGGTCACCAACGAGCC
GCGCTCGGCGGTGGGCAATCGCTCGCCGTACGAAGTGCTGGGCAAGCGCTATGTGGTGATGGACAACCCTGGCGACTATG
TCGAACGCGGCACCGCCTCTTACTACGGCAATAAGTTCCATGGCAGGCTGACCTCCAACAAGGAGGTCTACGACATGTAC
GCCTTCACCGCCGCGCACAAGACCTTGCCGCTGCCCAGCTTCGCGCTGGTCACCAACACCGACACCGGCCAGTCGGTGGT
GGTGCGCGTCAACGACCGCGGCCCGTTTCACGACGGCCGCGTGATCGATCTGAGCTACGCCGCGGCGGTGAAGTTGGGGA
TCACCGGCAAGGGCACCGGCAATGTTGAAGTGCGTGGCCTGACCGAAGCCGACAATGGCAATTTGCTCGCCAAGCGCCGC
AGTGGCCAGGCACCTGTGACGACTGCCGTTGCCACGGCACGGCCGGCCGCCAGCGCCAGCCAGATCGATGGCCTGGTAGA
GCGTTTGCCCACCCGTACCGTGCCGCCGCGTGCAGTCGCGACAGGTGCCGGCACCGCGGTCGCCACAACTGCCGCTGCAC
CCACTGCCGGTGCACCGGTCATTCCGGCGGGCGAGCGTTGGCGCTACCGCGTCGCCGATTCGCGCCAGCCTGGCAATGCC
GACAACTTCGATGCCTGGATGAAGGCGCAAGGCGTGCGTGTGGCCACCGGCAAGCCAACCGCTGCGGTCCCGCGCCCGAC
GTCGTCGGCCCCTGCTGCCGTGCCCGCCGCGGCGACGCCGGTCGCAGTTGCGGCGCCGGTCAAGCCGTCTGAGAGCACGG
CTTCGCGTCCGCTCAAGGCCGAACCAGTGCCCGCCAAGGCTCCCAGCGTGGCCGAAGCCGCACTCGGCGACATCCTGCTG
CAGGTCGCCAGCTTCGCCAGCCGCGAAAATGCCAATCGCGCGCTGTCGCAATTGGCGTCGGCGGGAATTGCCGGTGCCAG
CGTCAGCGACATCGTCAGCGGCGGGCGCACCCTGTGGCGCCTGCGCGTGAATGCACGCGACCACGCCAATGCCTCGGAGA
TCGCCCAGCGCATCGCCGGCCTCGGTTTCGGCCGCCCGCAGATCGTGGCCAATTAG

Upstream 100 bases:

>100_bases
AGAACTTCTACGCACTCACCCGTTACAACATTTCCAAGATGTACGCGATGGCCGTGTTCCAGCTATCCGAGGCCATCGCC
GGCAAGGAGTTACCCCCGGC

Downstream 100 bases:

>100_bases
TCGCGGGCGAGGCGGTCACTGCGTTAGGGAATGAAGCGCGAGCGCATTGGTCGTTTGCGCGCCAGCCGCCTAGGTCGTCT
TGCTTAAGCGCAAACGCGCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MNSIAGPKWLIPMALMLSLAACSSAPKKTAGSNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDTTPDDVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVTTAVATARPAASASQIDGLVERLPTRTVPPRAVATGAGTAVATTAAAPTAGAPVIPAGERWRYRVADSRQPGNA
DNFDAWMKAQGVRVATGKPTAAVPRPTSSAPAAVPAAATPVAVAAPVKPSESTASRPLKAEPVPAKAPSVAEAALGDILL
QVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN

Sequences:

>Translated_471_residues
MNSIAGPKWLIPMALMLSLAACSSAPKKTAGSNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDTTPDDVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVTTAVATARPAASASQIDGLVERLPTRTVPPRAVATGAGTAVATTAAAPTAGAPVIPAGERWRYRVADSRQPGNA
DNFDAWMKAQGVRVATGKPTAAVPRPTSSAPAAVPAAATPVAVAAPVKPSESTASRPLKAEPVPAKAPSVAEAALGDILL
QVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
>Mature_471_residues
MNSIAGPKWLIPMALMLSLAACSSAPKKTAGSNGSGAIKGVKVEGKGPAYVATGCPSTSPYAPAKEDPSTRGDYTAGGLY
KPGVKDTTPDDVPNVACIPEPLVTNEPRSAVGNRSPYEVLGKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMY
AFTAAHKTLPLPSFALVTNTDTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
SGQAPVTTAVATARPAASASQIDGLVERLPTRTVPPRAVATGAGTAVATTAAAPTAGAPVIPAGERWRYRVADSRQPGNA
DNFDAWMKAQGVRVATGKPTAAVPRPTSSAPAAVPAAATPVAVAAPVKPSESTASRPLKAEPVPAKAPSVAEAALGDILL
QVASFASRENANRALSQLASAGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=162, Percent_Identity=34.5679012345679, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 48403; Mature: 48403

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIAGPKWLIPMALMLSLAACSSAPKKTAGSNGSGAIKGVKVEGKGPAYVATGCPSTSP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC
YAPAKEDPSTRGDYTAGGLYKPGVKDTTPDDVPNVACIPEPLVTNEPRSAVGNRSPYEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCHHHH
GKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMYAFTAAHKTLPLPSFALVTNT
CCEEEEECCCCHHHHCCCHHHCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECC
DTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEECC
SGQAPVTTAVATARPAASASQIDGLVERLPTRTVPPRAVATGAGTAVATTAAAPTAGAPV
CCCCCEEEHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECCCCCCCCCC
IPAGERWRYRVADSRQPGNADNFDAWMKAQGVRVATGKPTAAVPRPTSSAPAAVPAAATP
CCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
VAVAAPVKPSESTASRPLKAEPVPAKAPSVAEAALGDILLQVASFASRENANRALSQLAS
EEEECCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
CCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure
MNSIAGPKWLIPMALMLSLAACSSAPKKTAGSNGSGAIKGVKVEGKGPAYVATGCPSTSP
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC
YAPAKEDPSTRGDYTAGGLYKPGVKDTTPDDVPNVACIPEPLVTNEPRSAVGNRSPYEVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCHHHH
GKRYVVMDNPGDYVERGTASYYGNKFHGRLTSNKEVYDMYAFTAAHKTLPLPSFALVTNT
CCEEEEECCCCHHHHCCCHHHCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCEEEEECC
DTGQSVVVRVNDRGPFHDGRVIDLSYAAAVKLGITGKGTGNVEVRGLTEADNGNLLAKRR
CCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEECC
SGQAPVTTAVATARPAASASQIDGLVERLPTRTVPPRAVATGAGTAVATTAAAPTAGAPV
CCCCCEEEHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECCCCCCCCCC
IPAGERWRYRVADSRQPGNADNFDAWMKAQGVRVATGKPTAAVPRPTSSAPAAVPAAATP
CCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
VAVAAPVKPSESTASRPLKAEPVPAKAPSVAEAALGDILLQVASFASRENANRALSQLAS
EEEECCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIAGASVSDIVSGGRTLWRLRVNARDHANASEIAQRIAGLGFGRPQIVAN
CCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]