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The map label for this gene is secD

Identifier: 84489369

GI number: 84489369

Start: 650790

End: 652121

Strand: Direct

Name: secD

Synonym: Msp_0559

Alternate gene names: 84489369

Gene position: 650790-652121 (Clockwise)

Preceding gene: 162316922

Following gene: 84489370

Centisome position: 36.82

GC content: 33.41

Gene sequence:

>1332_bases
GTGGTCACGATTAATCAATCCACCAAACAATTCCTAAAAAAACCAAGAACATTATTACTGATAATATTACTTATTGCAAG
TGTTGTTTCAGTAGCAGTCTTTGGTCTTCAAGAAGGTCTTGACCTTGCAGGAGGTTCAATGATACAATTACATCTTGAAA
AACCTGTTGATCAAGATACAATGTCTACAGTAACAGCAATATTAGATAAAAGGTTAAATGCATTTGGTATAAGTGATGTA
CAAGTAAGACAAAGTGGAGATCAGGATGTTATCGTTGAAATAGCGGGTGTGCAGCCTGATGAAGTTAAACATATTATAAG
TACACCTGGTAAATTTGAAGCAAAAATAAACAATAAAACAGCTCTAACAGGTGCAGATATATCCACAGTATCAGCAGCAG
AAGTAACAGGAACAAGATGGAAAGTACCATTTAGTGTTTCAACAGAAGCAGCAAATAAATTTGCAAATGTAGCAAAAGGT
CAAGCTGGAGCTACAGTAGATATGTATCTTGATGATAAACTAATATCATCACCACAATTAGATGCAGGTTTAGCAAATGG
TGTGGGTTCTACTGATATAGAAGTTTCAGGTGGAGAACAATCTAAACAAAAAGCACAAGAACAAGCAACAGAAATACACA
CAGTTCTAGAATCAGGAGCATTACCTGTAAAACTAGCAATTAGTGGAGTAAATAGTGTATCTGCAGAGTTAGGTTCACAA
TTTGAAACAGGTTCTCTTGTTGCAGGATTACTTGCACTACTGGCTATTGTAGCAGTAGTATCATTTAAATATAAATCTCC
ATCATTGGTAGTTCCTATTGTAATAACTAGTTTATCAGAATTAATTATTATTCTAGGATTTGCTTCAATAACACATTGGA
ACTTAGATTTAGCAGCTATTGCTGGTATAATTGCATCTATTGGTACAGGTGTAGACGACCAAATTGTAATGACAGATGAA
GTACTTGCAAGACGTGATAAAAGTGAAAGAAAAAACATAGTTAAATCACGTATTAAAAATGCATTCTTCATTGTATATGC
ATCAGCAGGTACATTAATAGCAGCAATGTTACCTTTAGCTTATATAGGATTTGCAAGAGGAGCAACAGGTATTGGTATGC
TTACAGGTTTTGCAGTAACAACTGTTGTTGGTGTAATAGTAGGTATATTTATAACAAGACCTGTGTTTGCAGATTATATG
GAAACATTCCTTATTAAAAGTCCTAAAGATCAAATAAATATTACCTCATCTGGTAAAAGTAAAAAAACTAAAAGAAATAA
GAAAAAAGGTAGAAAAACCATTGCAAGAGAAGAAGCTGAAAAAAATAGATAA

Upstream 100 bases:

>100_bases
TTAGAAGATATATCTGCTGTACTTATCATTGGATTACTATCAGACTTATTATCCACATGGCTTATGAACCTAGGAATACT
TAAATGGCATATAGAAAGGG

Downstream 100 bases:

>100_bases
GAATATTCTTCTCTATAATTCTTATTTTTTCAAATATTTACATTCTATTTTTTCTAATTAATATTAAACAATAAATTTTT
CCACATATATACTAAACTTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MVTINQSTKQFLKKPRTLLLIILLIASVVSVAVFGLQEGLDLAGGSMIQLHLEKPVDQDTMSTVTAILDKRLNAFGISDV
QVRQSGDQDVIVEIAGVQPDEVKHIISTPGKFEAKINNKTALTGADISTVSAAEVTGTRWKVPFSVSTEAANKFANVAKG
QAGATVDMYLDDKLISSPQLDAGLANGVGSTDIEVSGGEQSKQKAQEQATEIHTVLESGALPVKLAISGVNSVSAELGSQ
FETGSLVAGLLALLAIVAVVSFKYKSPSLVVPIVITSLSELIIILGFASITHWNLDLAAIAGIIASIGTGVDDQIVMTDE
VLARRDKSERKNIVKSRIKNAFFIVYASAGTLIAAMLPLAYIGFARGATGIGMLTGFAVTTVVGVIVGIFITRPVFADYM
ETFLIKSPKDQINITSSGKSKKTKRNKKKGRKTIAREEAEKNR

Sequences:

>Translated_443_residues
MVTINQSTKQFLKKPRTLLLIILLIASVVSVAVFGLQEGLDLAGGSMIQLHLEKPVDQDTMSTVTAILDKRLNAFGISDV
QVRQSGDQDVIVEIAGVQPDEVKHIISTPGKFEAKINNKTALTGADISTVSAAEVTGTRWKVPFSVSTEAANKFANVAKG
QAGATVDMYLDDKLISSPQLDAGLANGVGSTDIEVSGGEQSKQKAQEQATEIHTVLESGALPVKLAISGVNSVSAELGSQ
FETGSLVAGLLALLAIVAVVSFKYKSPSLVVPIVITSLSELIIILGFASITHWNLDLAAIAGIIASIGTGVDDQIVMTDE
VLARRDKSERKNIVKSRIKNAFFIVYASAGTLIAAMLPLAYIGFARGATGIGMLTGFAVTTVVGVIVGIFITRPVFADYM
ETFLIKSPKDQINITSSGKSKKTKRNKKKGRKTIAREEAEKNR
>Mature_443_residues
MVTINQSTKQFLKKPRTLLLIILLIASVVSVAVFGLQEGLDLAGGSMIQLHLEKPVDQDTMSTVTAILDKRLNAFGISDV
QVRQSGDQDVIVEIAGVQPDEVKHIISTPGKFEAKINNKTALTGADISTVSAAEVTGTRWKVPFSVSTEAANKFANVAKG
QAGATVDMYLDDKLISSPQLDAGLANGVGSTDIEVSGGEQSKQKAQEQATEIHTVLESGALPVKLAISGVNSVSAELGSQ
FETGSLVAGLLALLAIVAVVSFKYKSPSLVVPIVITSLSELIIILGFASITHWNLDLAAIAGIIASIGTGVDDQIVMTDE
VLARRDKSERKNIVKSRIKNAFFIVYASAGTLIAAMLPLAYIGFARGATGIGMLTGFAVTTVVGVIVGIFITRPVFADYM
ETFLIKSPKDQINITSSGKSKKTKRNKKKGRKTIAREEAEKNR

Specific function: Involved In Protein Export. [C]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 46983; Mature: 46983

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTINQSTKQFLKKPRTLLLIILLIASVVSVAVFGLQEGLDLAGGSMIQLHLEKPVDQDT
CEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHH
MSTVTAILDKRLNAFGISDVQVRQSGDQDVIVEIAGVQPDEVKHIISTPGKFEAKINNKT
HHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCE
ALTGADISTVSAAEVTGTRWKVPFSVSTEAANKFANVAKGQAGATVDMYLDDKLISSPQL
EECCCCCCCCCHHHCCCCEEECCEECCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCC
DAGLANGVGSTDIEVSGGEQSKQKAQEQATEIHTVLESGALPVKLAISGVNSVSAELGSQ
CCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCC
FETGSLVAGLLALLAIVAVVSFKYKSPSLVVPIVITSLSELIIILGFASITHWNLDLAAI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AGIIASIGTGVDDQIVMTDEVLARRDKSERKNIVKSRIKNAFFIVYASAGTLIAAMLPLA
HHHHHHHCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH
YIGFARGATGIGMLTGFAVTTVVGVIVGIFITRPVFADYMETFLIKSPKDQINITSSGKS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
KKTKRNKKKGRKTIAREEAEKNR
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVTINQSTKQFLKKPRTLLLIILLIASVVSVAVFGLQEGLDLAGGSMIQLHLEKPVDQDT
CEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHH
MSTVTAILDKRLNAFGISDVQVRQSGDQDVIVEIAGVQPDEVKHIISTPGKFEAKINNKT
HHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCE
ALTGADISTVSAAEVTGTRWKVPFSVSTEAANKFANVAKGQAGATVDMYLDDKLISSPQL
EECCCCCCCCCHHHCCCCEEECCEECCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCC
DAGLANGVGSTDIEVSGGEQSKQKAQEQATEIHTVLESGALPVKLAISGVNSVSAELGSQ
CCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCC
FETGSLVAGLLALLAIVAVVSFKYKSPSLVVPIVITSLSELIIILGFASITHWNLDLAAI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AGIIASIGTGVDDQIVMTDEVLARRDKSERKNIVKSRIKNAFFIVYASAGTLIAAMLPLA
HHHHHHHCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH
YIGFARGATGIGMLTGFAVTTVVGVIVGIFITRPVFADYMETFLIKSPKDQINITSSGKS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
KKTKRNKKKGRKTIAREEAEKNR
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]