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The map label for this gene is secF [C]

Identifier: 162316922

GI number: 162316922

Start: 649952

End: 650803

Strand: Direct

Name: secF [C]

Synonym: Msp_0558

Alternate gene names: 162316922

Gene position: 649952-650803 (Clockwise)

Preceding gene: 84489366

Following gene: 84489369

Centisome position: 36.77

GC content: 31.57

Gene sequence:

>852_bases
ATGGTAGAAATAATTAAATATATCACACGTCAATCTCATAAACCTCTGATTTTAATTCCAGTGATATTAATGATTCTATC
TCTTTTATATATAAGCGTCTTCGGATTAAATGAAGGTGTAGATTTAAAAGGAGGAACATTAGTTACAGTTGAACTTAATC
AGCCAATGACTCAATCACAAGTTACTCAACTTGTTAAAGATAAACTTGGTATTAATGATGTAAAAACATCTATGTCTGAT
AATACAGCTACAATAACAATATCTGGTAGTGTAGATCAGAGCCAATTTAATGAACTATTTAGTAGTGAATTTAAAGTTCT
GAGCTTTAGAAGTGTAGGAGCTCTACTTAGTGATGCAGCTCTAGGACAGATATACTATGCATTATTATTTGCATTTGTAT
TCATGTCAGTAACTGTATTCTTTGTATTTAGAGATTTAACACCTTCACTTGCTATTATATTATCAGCAGTTTGTAACTTA
TCCATAGCTGTTGGTAGTATGTCCTTGTTTGGAATACCATTATCAATTGCTAGTGTAGGTGCATTATTAATGCTTATAGG
GTATGGTGTAGATACAGATATTCTACTAACTACACGTCTATTAAAACGTAGACATGGAAGTTTAGATGATCGTGCTGAAG
ATGCTTGTAGAACAGGTTTAACATTAACATTTGCAACATTAGCAGCTATGATTGTATTATTTATTGTAGTAAAAGTATTT
ATACCAACAGCTCAAGTATTAGAAGATATATCTGCTGTACTTATCATTGGATTACTATCAGACTTATTATCCACATGGCT
TATGAACCTAGGAATACTTAAATGGCATATAGAAAGGGGTGGTCACGATTAA

Upstream 100 bases:

>100_bases
ATATCAGAAATTAGATATTTTATTTAATATTTTATTAAAAATAAACTTTTAATAAATATGGAGGCATTATAATTAAAATC
ACAGATAGGAGAGTTGTGAT

Downstream 100 bases:

>100_bases
TCAATCCACCAAACAATTCCTAAAAAAACCAAGAACATTATTACTGATAATATTACTTATTGCAAGTGTTGTTTCAGTAG
CAGTCTTTGGTCTTCAAGAA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MVEIIKYITRQSHKPLILIPVILMILSLLYISVFGLNEGVDLKGGTLVTVELNQPMTQSQVTQLVKDKLGINDVKTSMSD
NTATITISGSVDQSQFNELFSSEFKVLSFRSVGALLSDAALGQIYYALLFAFVFMSVTVFFVFRDLTPSLAIILSAVCNL
SIAVGSMSLFGIPLSIASVGALLMLIGYGVDTDILLTTRLLKRRHGSLDDRAEDACRTGLTLTFATLAAMIVLFIVVKVF
IPTAQVLEDISAVLIIGLLSDLLSTWLMNLGILKWHIERGGHD

Sequences:

>Translated_283_residues
MVEIIKYITRQSHKPLILIPVILMILSLLYISVFGLNEGVDLKGGTLVTVELNQPMTQSQVTQLVKDKLGINDVKTSMSD
NTATITISGSVDQSQFNELFSSEFKVLSFRSVGALLSDAALGQIYYALLFAFVFMSVTVFFVFRDLTPSLAIILSAVCNL
SIAVGSMSLFGIPLSIASVGALLMLIGYGVDTDILLTTRLLKRRHGSLDDRAEDACRTGLTLTFATLAAMIVLFIVVKVF
IPTAQVLEDISAVLIIGLLSDLLSTWLMNLGILKWHIERGGHD
>Mature_283_residues
MVEIIKYITRQSHKPLILIPVILMILSLLYISVFGLNEGVDLKGGTLVTVELNQPMTQSQVTQLVKDKLGINDVKTSMSD
NTATITISGSVDQSQFNELFSSEFKVLSFRSVGALLSDAALGQIYYALLFAFVFMSVTVFFVFRDLTPSLAIILSAVCNL
SIAVGSMSLFGIPLSIASVGALLMLIGYGVDTDILLTTRLLKRRHGSLDDRAEDACRTGLTLTFATLAAMIVLFIVVKVF
IPTAQVLEDISAVLIIGLLSDLLSTWLMNLGILKWHIERGGHD

Specific function: Involved In Protein Export. [C]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 30819; Mature: 30819

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEIIKYITRQSHKPLILIPVILMILSLLYISVFGLNEGVDLKGGTLVTVELNQPMTQSQ
CHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHH
VTQLVKDKLGINDVKTSMSDNTATITISGSVDQSQFNELFSSEFKVLSFRSVGALLSDAA
HHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGQIYYALLFAFVFMSVTVFFVFRDLTPSLAIILSAVCNLSIAVGSMSLFGIPLSIASVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHH
ALLMLIGYGVDTDILLTTRLLKRRHGSLDDRAEDACRTGLTLTFATLAAMIVLFIVVKVF
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IPTAQVLEDISAVLIIGLLSDLLSTWLMNLGILKWHIERGGHD
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
>Mature Secondary Structure
MVEIIKYITRQSHKPLILIPVILMILSLLYISVFGLNEGVDLKGGTLVTVELNQPMTQSQ
CHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHH
VTQLVKDKLGINDVKTSMSDNTATITISGSVDQSQFNELFSSEFKVLSFRSVGALLSDAA
HHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGQIYYALLFAFVFMSVTVFFVFRDLTPSLAIILSAVCNLSIAVGSMSLFGIPLSIASVG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHH
ALLMLIGYGVDTDILLTTRLLKRRHGSLDDRAEDACRTGLTLTFATLAAMIVLFIVVKVF
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IPTAQVLEDISAVLIIGLLSDLLSTWLMNLGILKWHIERGGHD
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]