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The map label for this gene is rnhC [H]

Identifier: 84489361

GI number: 84489361

Start: 643872

End: 644801

Strand: Direct

Name: rnhC [H]

Synonym: Msp_0551

Alternate gene names: 84489361

Gene position: 643872-644801 (Clockwise)

Preceding gene: 84489360

Following gene: 84489362

Centisome position: 36.43

GC content: 23.01

Gene sequence:

>930_bases
GTGAATAATAATGTATCTCTTTTTTTAATTATTTTTTCAAGTGTTTATATGAAATCAGTTAAATTATCAAATAGTGAAAT
TAAATCTTTTATGGAAAAAACCAGTACATTTCATCATTTAAATCCAAAACAATATGAGAGTATTCGTATTAAAGATGGTG
ATGTTTTTTTTGTTTTATATAATTCTGGTAAACTTGTTTATAATGATACAAGGGGATGTTTATCTATTTTAGATGATATT
TTAGAAAAGAGGGATTATTTTAAAGAGAATTCATTTGGAAAAAATGAAAATTCTATTTATAATAATACTATTTCTATGAA
GAAGTATCAGTATATTATAGGTTCTGATGAAACTGGTAAAGGTGAATGGTATGGACCATTAGTTGTGTGTGCTGTATGTA
CATCAAATGATGATATTTTAAAATTAAAAAGTATTGGTGTTAAGGATAGTAAGAAATTATCAACAAAGGAAATATTTTCA
TTATATGAAAAAATAGAAAAACTAAATATAACATATGAAGTAATAGTTCTAAAACCATTTAGCTACAATAAACTATACAC
TAAATTCACAAATGAAAACAAAAACCTCAATCATCTACTAGCACATCTTCATTATAAGGTAATAAATCAATTACTTACAA
AAATTAACACAACTGATGTACTTGTAATTATTGATAAATTTGATTATAAGAAGATGAATCAGTATCTTGACATAAATCCA
AAAATAGATGTAATACAAGAGACTAATGGAGAAAAATATATTCCAGTAGCAACAAGTAGTATTATTGCCAAGTATTATTA
TGAAAAAACATTAAAAGAAATAGAAGAAAGATATAATATTAATAGAAAGATAAAACCCAAAAACATAGAAAAAGATATAA
TAGATAAAGTTGCAAAAACACACTTTAAAAATATTAAACCATACACATAA

Upstream 100 bases:

>100_bases
GTTGAAAATGGTGTTAAAACTGCTCATATTCTTGATGGTAGACTTAATCATTCTATTTTATTAGAAATCTTCACAAAACA
TGGAATAGGTACAATGGTAC

Downstream 100 bases:

>100_bases
AGAAAATGGTTTTTAGGAGTATAAAATATGAGTAAAATAGATGTTGCAATAATAGGTGCAAGTGGATATACTGGGGGAGA
ATTAGTTAGATTATTAACAA

Product: putative ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNNNVSLFLIIFSSVYMKSVKLSNSEIKSFMEKTSTFHHLNPKQYESIRIKDGDVFFVLYNSGKLVYNDTRGCLSILDDI
LEKRDYFKENSFGKNENSIYNNTISMKKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFS
LYEKIEKLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDKFDYKKMNQYLDINP
KIDVIQETNGEKYIPVATSSIIAKYYYEKTLKEIEERYNINRKIKPKNIEKDIIDKVAKTHFKNIKPYT

Sequences:

>Translated_309_residues
MNNNVSLFLIIFSSVYMKSVKLSNSEIKSFMEKTSTFHHLNPKQYESIRIKDGDVFFVLYNSGKLVYNDTRGCLSILDDI
LEKRDYFKENSFGKNENSIYNNTISMKKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFS
LYEKIEKLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDKFDYKKMNQYLDINP
KIDVIQETNGEKYIPVATSSIIAKYYYEKTLKEIEERYNINRKIKPKNIEKDIIDKVAKTHFKNIKPYT
>Mature_309_residues
MNNNVSLFLIIFSSVYMKSVKLSNSEIKSFMEKTSTFHHLNPKQYESIRIKDGDVFFVLYNSGKLVYNDTRGCLSILDDI
LEKRDYFKENSFGKNENSIYNNTISMKKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFS
LYEKIEKLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDKFDYKKMNQYLDINP
KIDVIQETNGEKYIPVATSSIIAKYYYEKTLKEIEERYNINRKIKPKNIEKDIIDKVAKTHFKNIKPYT

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 36165; Mature: 36165

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNVSLFLIIFSSVYMKSVKLSNSEIKSFMEKTSTFHHLNPKQYESIRIKDGDVFFVLY
CCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEE
NSGKLVYNDTRGCLSILDDILEKRDYFKENSFGKNENSIYNNTISMKKYQYIIGSDETGK
CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEEEEEEEEEEECCCCCCC
GEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKIEKLNITYEVIVLKPF
CCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
SYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDKFDYKKMNQYLDINP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHEECCCC
KIDVIQETNGEKYIPVATSSIIAKYYYEKTLKEIEERYNINRKIKPKNIEKDIIDKVAKT
CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
HFKNIKPYT
HHCCCCCCC
>Mature Secondary Structure
MNNNVSLFLIIFSSVYMKSVKLSNSEIKSFMEKTSTFHHLNPKQYESIRIKDGDVFFVLY
CCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEE
NSGKLVYNDTRGCLSILDDILEKRDYFKENSFGKNENSIYNNTISMKKYQYIIGSDETGK
CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEEEEEEEEEEECCCCCCC
GEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKIEKLNITYEVIVLKPF
CCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
SYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDKFDYKKMNQYLDINP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHEECCCC
KIDVIQETNGEKYIPVATSSIIAKYYYEKTLKEIEERYNINRKIKPKNIEKDIIDKVAKT
CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
HFKNIKPYT
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]