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The map label for this gene is yddU [C]

Identifier: 83593934

GI number: 83593934

Start: 3024243

End: 3026708

Strand: Direct

Name: yddU [C]

Synonym: Rru_A2602

Alternate gene names: 83593934

Gene position: 3024243-3026708 (Clockwise)

Preceding gene: 83593932

Following gene: 83593935

Centisome position: 69.48

GC content: 68.45

Gene sequence:

>2466_bases
ATGTCGATCCGCCTGAAAACAGCTCTGCTGTCGGGGATTCTCCTCGCCATTCTGGTCAGTGGACTGGGGGGCGTGTTGTG
GACGGTTGTCCGCCCCGGCTTCCAGGACATCGAGCGGGCCAGGGCCGCCGACCACATGACCGCCCTGCTCGCCGCCATCT
CGGCTGATATCGACAGCATCGGCACCTTCATCCTCAGCTATTCTTCGTGGGATGAAACCTATGCCTTCGTGCGGACGGGC
GATCCCACCTATGTCGCCAATAATCTCGCGGTGGAAGGGGCGAAAAACGCCCAGAGCCATTTCGCCCTGGTCCTCACCCC
CAAGGGGCGGACGGTGTTTTCCAGGCTGTGGAACGACGACTTCACCGCGACTCTGCCCCCTCCCGACGCCGCCGGCGGCG
GCTTGCCCGCCAACCATCCGCTGATGGCGGCGCTCTCCCACCCCGAAGGCGTCCGCGGCCTTTTGCAAACCCCCCGGGGG
CCGTTGGCGGTGGCGGCCCGGCCGATCCTGCCCAGCAACGAACACGGTCCGCCCCGCGGGGTCCTGGTGTTCGGCCGCTG
GCTAACCCATGCGCTGAGCGACCACCCGCCGCTCCCCCACCTGTCCCCTCTCCGGCTGTGGCTGGCCCCGGCCCCGGGCG
ACGCGCCGGAAAACGTGCGGCGGCTGCTGGCCGCCGATGGCCCCGATCTGGAGATCGACGGCATCGGCGAGCCAACGTCC
TTGGTCACCGCCGGCATCCGCCTTGTCGATCTGGAGGGGGCGCCCGTCGCCGCTCTCACCACCACGCTGGCCAAAACGGT
TGAACCCCAAGGGGAGTCCATCATCCGCCTCGCCCTGGTGATCGCCGCCCTTGGCAGCCTGGGGGTGGTGGCCGTGGGGC
TGGTGAGCAATCACCTGATGATCGTCGCCCCTCTGCGCCGCCTGGAAAGCCACATCACCACCCTGTCGCGCACCGGGGAT
CTCGATACCCGTCTGGTGCTCGACCGCAAGGACGAAATCGGCCTGCTCGCCCGCGCCTTCGCCACCATGCAGGGCCGCAT
TCGCCATCTCGCCCATTACGACCCCCTGACCGGCTTGCCCAACCGAACCCTGTTCACCATGCTTGGCGAAGGCGCCCTAG
CCCGGCGGCGGGCCGATCGCAACGGCGGGGGTCGGCGGGTCGGCGTGGCGATCCTTGATCTCGATCGCCTGAACACCCTG
ACGATCGGCCTCGGGCAAGGCGGTAGCGAGCGGGCCCTGGTGGCGGTCGGCCGTCGGCTGGCCGCCCTGGCCGGTCCGGC
CGATGTGGTGGCGCGCGGCGGGGATGGCCGCTTTCTCGTTCTGCTTGGCGATCTCGCGCCCGCTCAAGCCGGCTCGATCG
TCGAACGCGAGGCGGCCGAAAGGCTGGCCTCGGCTTTCGCCAAGCCTTTCACCCCCGACGATCTCGTCGGCGCGCCGCTT
TCCCTGACGGCCAGCATCGGTCTCGCCCTTTTTCCCCAAGACGGCGAGACCCTGGAAACCCTGGTCACCCATGCCGAAGT
CGCCGTCCATCAGGCCAAGCTCCTCGGGCGTAATAACTTCCAGTTCTTCGATGACACCCTCAATCGCCAAGCGCGCGAAA
TCCTCGCCCTGGAAAGCGCCCTTTACGAGGCTCTCGCCGACAACACCTTGTCGCTGTGTTTCCAGCCGCGGATCGATGCC
GTGCGCGGCCACGCCATCGAGCTGAAGGCCCTGGCCCGCTGGGACCATCCCAGCCGCGATCTGATCGTCCTTGAGGACGT
CTTGCCCCTGATCAAACAGGACGGGCTTCTGGCCGAGATCGACCGCTGGATGAGCAACGCCGCCTGCCGCCAGATCCGTC
AATGGCGCGATCAGGGCGTCAGCTTTCCGCCAATCGCCATCGCCCTGTCGGCCCGCCCCCTGACCGCCGGCGACCCGGGT
TTGGCCCCGATCGCCGAAGCGATCGCCGCCAATGGCGTCGATCCCGGCGATCTCGCCGTCGAGATCGCCCAAAGCGCGAT
CAAAGGGCAATTTCCCGAAACCAAGGCTCCTGAAACCCAGGCTCCCGAAGACCGGCCCGCCGAGGAACTCCCCTGGCCCG
ACGGGCTGGCCGGCCTTGGGCTCGGCCTTGTCATCGATGTCGCCGACGCCGGCGTCGTCTCGCCCGCGCTCTTGCGCCGT
TTCCCGCTGACCCGGCTGACGATCGGCGCCGCCCTGGTCGCCAAACTGCCCGATTGCCGCGAAAGCCGCGCCCTCGTCCG
CGCCCTGATCGCCCTGGCCGATGAACTCGATCTCGAGTGTCTGGCCGAAGGGGTGGAGCGCGGCGATCAGGCCGACTGGC
TGCTGGCGGCGGGCTGCCGCCTTCAACAGGGCCTTTTTCACGCCCGCCCCCAGGATCAGACGGTCATCTTGCGCTGGCTT
GGCCAGACGCCGCCGCGCGGCCTCTCCTCCCCCGGCCCCCGGGACCGCAAACAGGACGGCGTTTGA

Upstream 100 bases:

>100_bases
CTTAAAAGTGCCCCTGCCGGGCAGTTTCATCTAATATAGGGCTCCCCGGTAAGACAATACGATCAAAGCCCCCGCCCCCG
CGCTTTCCAGGGACCGAAGA

Downstream 100 bases:

>100_bases
CGCGGGGGAAGGTTGCGTGTGGGCCCCCTTCTCCGCACCCGGGGAATGCCCTATCAAGAAGCCAAGGCAAAGCGGTTCGC
TCCCCCTTCCCCCAGGGATC

Product: periplasmic sensor diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 821; Mature: 820

Protein sequence:

>821_residues
MSIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALLAAISADIDSIGTFILSYSSWDETYAFVRTG
DPTYVANNLAVEGAKNAQSHFALVLTPKGRTVFSRLWNDDFTATLPPPDAAGGGLPANHPLMAALSHPEGVRGLLQTPRG
PLAVAARPILPSNEHGPPRGVLVFGRWLTHALSDHPPLPHLSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTS
LVTAGIRLVDLEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLMIVAPLRRLESHITTLSRTGD
LDTRLVLDRKDEIGLLARAFATMQGRIRHLAHYDPLTGLPNRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTL
TIGLGQGGSERALVAVGRRLAALAGPADVVARGGDGRFLVLLGDLAPAQAGSIVEREAAERLASAFAKPFTPDDLVGAPL
SLTASIGLALFPQDGETLETLVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESALYEALADNTLSLCFQPRIDA
VRGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEIDRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPG
LAPIAEAIAANGVDPGDLAVEIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLGLGLVIDVADAGVVSPALLRR
FPLTRLTIGAALVAKLPDCRESRALVRALIALADELDLECLAEGVERGDQADWLLAAGCRLQQGLFHARPQDQTVILRWL
GQTPPRGLSSPGPRDRKQDGV

Sequences:

>Translated_821_residues
MSIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALLAAISADIDSIGTFILSYSSWDETYAFVRTG
DPTYVANNLAVEGAKNAQSHFALVLTPKGRTVFSRLWNDDFTATLPPPDAAGGGLPANHPLMAALSHPEGVRGLLQTPRG
PLAVAARPILPSNEHGPPRGVLVFGRWLTHALSDHPPLPHLSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTS
LVTAGIRLVDLEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLMIVAPLRRLESHITTLSRTGD
LDTRLVLDRKDEIGLLARAFATMQGRIRHLAHYDPLTGLPNRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTL
TIGLGQGGSERALVAVGRRLAALAGPADVVARGGDGRFLVLLGDLAPAQAGSIVEREAAERLASAFAKPFTPDDLVGAPL
SLTASIGLALFPQDGETLETLVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESALYEALADNTLSLCFQPRIDA
VRGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEIDRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPG
LAPIAEAIAANGVDPGDLAVEIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLGLGLVIDVADAGVVSPALLRR
FPLTRLTIGAALVAKLPDCRESRALVRALIALADELDLECLAEGVERGDQADWLLAAGCRLQQGLFHARPQDQTVILRWL
GQTPPRGLSSPGPRDRKQDGV
>Mature_820_residues
SIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALLAAISADIDSIGTFILSYSSWDETYAFVRTGD
PTYVANNLAVEGAKNAQSHFALVLTPKGRTVFSRLWNDDFTATLPPPDAAGGGLPANHPLMAALSHPEGVRGLLQTPRGP
LAVAARPILPSNEHGPPRGVLVFGRWLTHALSDHPPLPHLSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTSL
VTAGIRLVDLEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLMIVAPLRRLESHITTLSRTGDL
DTRLVLDRKDEIGLLARAFATMQGRIRHLAHYDPLTGLPNRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTLT
IGLGQGGSERALVAVGRRLAALAGPADVVARGGDGRFLVLLGDLAPAQAGSIVEREAAERLASAFAKPFTPDDLVGAPLS
LTASIGLALFPQDGETLETLVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESALYEALADNTLSLCFQPRIDAV
RGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEIDRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPGL
APIAEAIAANGVDPGDLAVEIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLGLGLVIDVADAGVVSPALLRRF
PLTRLTIGAALVAKLPDCRESRALVRALIALADELDLECLAEGVERGDQADWLLAAGCRLQQGLFHARPQDQTVILRWLG
QTPPRGLSSPGPRDRKQDGV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=499, Percent_Identity=27.0541082164329, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI1787541, Length=465, Percent_Identity=28.6021505376344, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI226510982, Length=530, Percent_Identity=25.6603773584906, Blast_Score=127, Evalue=4e-30,
Organism=Escherichia coli, GI87081743, Length=275, Percent_Identity=24, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87303; Mature: 87172

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALLAAISADIDSI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
GTFILSYSSWDETYAFVRTGDPTYVANNLAVEGAKNAQSHFALVLTPKGRTVFSRLWNDD
HHHHHEECCCCCEEEEEECCCCCEEECCEEECCCCCCCCCEEEEEECCCHHHHHHHCCCC
FTATLPPPDAAGGGLPANHPLMAALSHPEGVRGLLQTPRGPLAVAARPILPSNEHGPPRG
CEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
VLVFGRWLTHALSDHPPLPHLSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTS
EEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHH
LVTAGIRLVDLEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLM
HHHCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
IVAPLRRLESHITTLSRTGDLDTRLVLDRKDEIGLLARAFATMQGRIRHLAHYDPLTGLP
EEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTLTIGLGQGGSERALVAVGRRL
CCHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
AALAGPADVVARGGDGRFLVLLGDLAPAQAGSIVEREAAERLASAFAKPFTPDDLVGAPL
HHHCCCHHHEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
SLTASIGLALFPQDGETLETLVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESA
EEHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LYEALADNTLSLCFQPRIDAVRGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEI
HHHHHHCCHHEEEECCCHHHHCCCEEEEEHHHCCCCCCCCEEEHHHHHHHHHCCCHHHHH
DRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPGLAPIAEAIAANGVDPGDLAV
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
EIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLGLGLVIDVADAGVVSPALLRR
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHCCCEEEEEECCCCCCCHHHHHH
FPLTRLTIGAALVAKLPDCRESRALVRALIALADELDLECLAEGVERGDQADWLLAAGCR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCH
LQQGLFHARPQDQTVILRWLGQTPPRGLSSPGPRDRKQDGV
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALLAAISADIDSI
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
GTFILSYSSWDETYAFVRTGDPTYVANNLAVEGAKNAQSHFALVLTPKGRTVFSRLWNDD
HHHHHEECCCCCEEEEEECCCCCEEECCEEECCCCCCCCCEEEEEECCCHHHHHHHCCCC
FTATLPPPDAAGGGLPANHPLMAALSHPEGVRGLLQTPRGPLAVAARPILPSNEHGPPRG
CEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
VLVFGRWLTHALSDHPPLPHLSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTS
EEEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCHH
LVTAGIRLVDLEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLM
HHHCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
IVAPLRRLESHITTLSRTGDLDTRLVLDRKDEIGLLARAFATMQGRIRHLAHYDPLTGLP
EEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTLTIGLGQGGSERALVAVGRRL
CCHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
AALAGPADVVARGGDGRFLVLLGDLAPAQAGSIVEREAAERLASAFAKPFTPDDLVGAPL
HHHCCCHHHEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
SLTASIGLALFPQDGETLETLVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESA
EEHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LYEALADNTLSLCFQPRIDAVRGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEI
HHHHHHCCHHEEEECCCHHHHCCCEEEEEHHHCCCCCCCCEEEHHHHHHHHHCCCHHHHH
DRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPGLAPIAEAIAANGVDPGDLAV
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
EIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLGLGLVIDVADAGVVSPALLRR
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHCCCEEEEEECCCCCCCHHHHHH
FPLTRLTIGAALVAKLPDCRESRALVRALIALADELDLECLAEGVERGDQADWLLAAGCR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCH
LQQGLFHARPQDQTVILRWLGQTPPRGLSSPGPRDRKQDGV
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]