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The map label for this gene is yhcZ [H]

Identifier: 83593935

GI number: 83593935

Start: 3026976

End: 3027656

Strand: Direct

Name: yhcZ [H]

Synonym: Rru_A2603

Alternate gene names: 83593935

Gene position: 3026976-3027656 (Clockwise)

Preceding gene: 83593934

Following gene: 83593939

Centisome position: 69.54

GC content: 65.2

Gene sequence:

>681_bases
ATGCGCGTCTTGTTAGCCGACGACCATTCGATCATCCGCAACGCCCTGAAGTTCATCCTTCAGGACCTGGAAGCCGAGGT
GACGTTCGAGGAGGCCCGGGAATATCCGTCGCTGGAAGATCGGCTGGCGGCCGAAGGGCCGCCGCTCGACATGGTGGTGA
TGGACCTGCAGATGCCCGGTTACGAGGGTCTGGCGCAGATCCGCCGCATCGTCGAGCGCGCCGCCCCAACCCCGATCGCC
GTCTTCTCGATGATGGAGGCGGTCGAGGATATGCGGGCGGTGCTGCGCCAGGGAGTGCGGGCCTTCATCCCCAAATCCAC
CGATGAGGCCCTGATCGGCACCCTGCTCAAACTGGTGGCCGGCGGCGGCACCTATGTTCCCGCCCAGGTCAGCGGCATCT
CCGACTGCCGCTTCCCGCCCCCGCTCAAGGTCGTCCTCGCCACCGATATCCGAACCATCGGCGAAGACTTCGACGACAAT
CCCCGGCTCAGCGACCTCACCCGTCGCCAGCGCGAGGTCCTGGCCCTGATGAGCCAGGGGCTGTCCAATCTGGAGATCGG
CAACCGTCTGGGTCTTAATCTGTCAACGGTGAAAACCCATGTCACCGGGATCTTGAAGGCGCTTGACGCCGGCAACCGCA
CCCAGGCGGTGCTCATGGCCCGCGGCCTCGACCACGGGTGA

Upstream 100 bases:

>100_bases
CCTTAAGGGAAACCCCGGATGGTGCCGGTTTTCCGCCCCATTCCTTGCCGGTGGCTCCCCCCCGCCGCGGTTTCCCAGAT
TCGAACGGAGCACGACTCCC

Downstream 100 bases:

>100_bases
GACGGGTCCGCAGATTTTCGCTCAAGACGCCGAGGGGAAGGCCCGTGCGGTCCGATAGGCGTCGACGAAGCGGAGGAAGT
CGGCCTCGGGCAGCGGCTTT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQMPGYEGLAQIRRIVERAAPTPIA
VFSMMEAVEDMRAVLRQGVRAFIPKSTDEALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDN
PRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMARGLDHG

Sequences:

>Translated_226_residues
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQMPGYEGLAQIRRIVERAAPTPIA
VFSMMEAVEDMRAVLRQGVRAFIPKSTDEALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDN
PRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMARGLDHG
>Mature_226_residues
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQMPGYEGLAQIRRIVERAAPTPIA
VFSMMEAVEDMRAVLRQGVRAFIPKSTDEALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDN
PRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMARGLDHG

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=23.1884057971014, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789937, Length=219, Percent_Identity=24.6575342465753, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788521, Length=224, Percent_Identity=24.5535714285714, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24744; Mature: 24744

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQMPG
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCC
YEGLAQIRRIVERAAPTPIAVFSMMEAVEDMRAVLRQGVRAFIPKSTDEALIGTLLKLVA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDNPRLSDLTRRQREVLALMSQG
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
LSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMARGLDHG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQMPG
CEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCC
YEGLAQIRRIVERAAPTPIAVFSMMEAVEDMRAVLRQGVRAFIPKSTDEALIGTLLKLVA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDNPRLSDLTRRQREVLALMSQG
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
LSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMARGLDHG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]