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The map label for this gene is ycdO [H]

Identifier: 83593932

GI number: 83593932

Start: 3022172

End: 3022990

Strand: Direct

Name: ycdO [H]

Synonym: Rru_A2600

Alternate gene names: 83593932

Gene position: 3022172-3022990 (Clockwise)

Preceding gene: 83593931

Following gene: 83593934

Centisome position: 69.43

GC content: 62.03

Gene sequence:

>819_bases
ATGCGTTTTCCCAGGCTTTTCGGCGCCACGGCGCTGGCCCTCGTTCTTGCCAACGGCGCTTTCGCCCAGCAGGCCAGCCT
CGACCTCGTCGAACCGATCACGGAATACAAGCTGTATGTGTCCGAGCAACTGGCCAAGCTGGTCAAGGACACCACCGCCT
TCACCGCCGCCGTCAAGGCTGGCGAGATCGAGAAGGCCAAGGCGCTGTTCGCCCCGACCCGCCTGTCCTACGAGGCGATC
GAGCCGATCGCCGAATTATTCTCCGATCTCGACGTCGCCATCGATTCCCGCGCCGATGATTACGAAAATGGCGAGGCCAA
TCCCGATTTCCCGGGCTTCCACCGCATCGAATACGGCCTTTGGGAAAAGAATTCGACCGAGGGTCTGGCCCCGGTCGCCG
ACAAGCTGCTCGCCGACGTCAAAGAGCTTGAAAGCCGCATCGCCTCGCTGACCTTCCCGCCCGAAAAGGTGGTGGGTGGC
GCCGCCGTGCTGATGGAGGAGGTGGCCGCCACCAAGATCTCGGGCGAGGAGGACCGCTATAGCCACACCGACCTGTGGGA
CTTCCGGGGCAATTTCGACGGCGCGCGCAAGATCGTCGATCTGGTGCGCCCGCTGATCGTCGAGAAGGAGGCCGCCTTCC
TCAAGACCGTCGACGCCAATTTCACCCAGGTCGACACCATCTTGAACAAATACAAGAAAGGCGAGGGCTATGTGACCTAT
GACAAGCTGACCGAGGCCGACCGCAAGGTTTTGGCCACGGCGGTCAACACCCTGGCCGAAGACCTCTCCACCTTGCGCGG
CAAGCTCGGCCTCGATTAA

Upstream 100 bases:

>100_bases
ACAACTATTTTCTTCGATATCAAAAGCTTGAGAGCGGCGCGCTGGAAGCAGATCTCCCGCACGCCGCCCTCAAGCCTTCC
CCGACAAGGAGACCGATAGA

Downstream 100 bases:

>100_bases
CCAATCTCCCCGAGCGATCCGCAGCGGAGCATGACGGCGGTTCGCTTGCCGATCCAGACCCCGGCGGTGGTCGCCCGACC
GCCGCCGGGATCAATCCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRFPRLFGATALALVLANGAFAQQASLDLVEPITEYKLYVSEQLAKLVKDTTAFTAAVKAGEIEKAKALFAPTRLSYEAI
EPIAELFSDLDVAIDSRADDYENGEANPDFPGFHRIEYGLWEKNSTEGLAPVADKLLADVKELESRIASLTFPPEKVVGG
AAVLMEEVAATKISGEEDRYSHTDLWDFRGNFDGARKIVDLVRPLIVEKEAAFLKTVDANFTQVDTILNKYKKGEGYVTY
DKLTEADRKVLATAVNTLAEDLSTLRGKLGLD

Sequences:

>Translated_272_residues
MRFPRLFGATALALVLANGAFAQQASLDLVEPITEYKLYVSEQLAKLVKDTTAFTAAVKAGEIEKAKALFAPTRLSYEAI
EPIAELFSDLDVAIDSRADDYENGEANPDFPGFHRIEYGLWEKNSTEGLAPVADKLLADVKELESRIASLTFPPEKVVGG
AAVLMEEVAATKISGEEDRYSHTDLWDFRGNFDGARKIVDLVRPLIVEKEAAFLKTVDANFTQVDTILNKYKKGEGYVTY
DKLTEADRKVLATAVNTLAEDLSTLRGKLGLD
>Mature_272_residues
MRFPRLFGATALALVLANGAFAQQASLDLVEPITEYKLYVSEQLAKLVKDTTAFTAAVKAGEIEKAKALFAPTRLSYEAI
EPIAELFSDLDVAIDSRADDYENGEANPDFPGFHRIEYGLWEKNSTEGLAPVADKLLADVKELESRIASLTFPPEKVVGG
AAVLMEEVAATKISGEEDRYSHTDLWDFRGNFDGARKIVDLVRPLIVEKEAAFLKTVDANFTQVDTILNKYKKGEGYVTY
DKLTEADRKVLATAVNTLAEDLSTLRGKLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=248, Percent_Identity=60.4838709677419, Blast_Score=298, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 29886; Mature: 29886

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPRLFGATALALVLANGAFAQQASLDLVEPITEYKLYVSEQLAKLVKDTTAFTAAVKA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEIEKAKALFAPTRLSYEAIEPIAELFSDLDVAIDSRADDYENGEANPDFPGFHRIEYGL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCC
WEKNSTEGLAPVADKLLADVKELESRIASLTFPPEKVVGGAAVLMEEVAATKISGEEDRY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
SHTDLWDFRGNFDGARKIVDLVRPLIVEKEAAFLKTVDANFTQVDTILNKYKKGEGYVTY
CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEH
DKLTEADRKVLATAVNTLAEDLSTLRGKLGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRFPRLFGATALALVLANGAFAQQASLDLVEPITEYKLYVSEQLAKLVKDTTAFTAAVKA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEIEKAKALFAPTRLSYEAIEPIAELFSDLDVAIDSRADDYENGEANPDFPGFHRIEYGL
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCC
WEKNSTEGLAPVADKLLADVKELESRIASLTFPPEKVVGGAAVLMEEVAATKISGEEDRY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
SHTDLWDFRGNFDGARKIVDLVRPLIVEKEAAFLKTVDANFTQVDTILNKYKKGEGYVTY
CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEH
DKLTEADRKVLATAVNTLAEDLSTLRGKLGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]