Click here to switch to the map view.

The map label for this gene is ybiR [C]

Identifier: 83593788

GI number: 83593788

Start: 2851537

End: 2852778

Strand: Direct

Name: ybiR [C]

Synonym: Rru_A2453

Alternate gene names: 83593788

Gene position: 2851537-2852778 (Clockwise)

Preceding gene: 83593787

Following gene: 83593789

Centisome position: 65.51

GC content: 68.2

Gene sequence:

>1242_bases
ATGGATTTGTTCATTCTCGCCGTCTTCATCGCCACCTATCTGGGCATGGCTTTGGGCCGCGTTCCCGGGTTGGGCGTTGA
TCGCACCGGCATCGCCCTGCTCGCGGCCATCGTCTTGCAAACCGTGGCGCCGCGCGACGGCGCTGCCCTGGTCGCCGCCA
TCGATTTCGAGACCCTGGCCATCCTCTTCGGCCTGATGGTGGTCAGCATCCAATTCGCCGCCTGCGGTTTCCATGACCGC
TGCGCCCATTGGCTGGCCAATGCCGCCTGCGGTCCCTTCGTGCTGCTGGCCCTGGTGGTGGGGGTGGCCGGCGGGTTGGC
CGCCCTGTTGACCAACGACGTGGTGGCCCTGGCGATGACGCCGATGCTGACGCGTGGCCTGATGGCGCGCGGCCTTGATC
CCAAGCCCTATCTGATCGCCCTGGCCGGGGCGGCCAATGCCGGGTCGGCGGCGACCCTGATCGGCAATCCCCAGAACATC
CTGATCGCCCAGACCGGCGATCTTGATCTGCTGCCCTTCCTTGGCGCCTGCCTGCCGCCGGCGCTGATCGGCATGGCCTG
CTGCTGGGCCTGCGTGGCGGTGATCTGGCGCGCCGCGCTGCGCCGCCCCGCTGTCCCGCCCGCCGCCCCACCCGCCGCCC
CACCCGCCACGATGGCGCCGCCGGCGGTCGATCGGTCGGGGCTGATCAAGGGGCTGGTGGCCACCGCCCTGCTGCTCGTC
TTGTTCCTCACCCCCCTCGACCGGGCGACGGCGGCGCTGATCGTGGCTGGTTTAATCCTGACCAGCCGCAGACTGCGCAG
CCGCGACACCTTGGGACTGGTCGATTGGCAGTTGCTGATCTTGTTCGTCGGCCTGTTCGTCGTCGTTGATTCTTTCACCG
CCACCGGCCTGCCGAGCCTGCTGCTTGACGCCGCCACCACCCGTGGCCTGGATCCCTTGGCGACGGGGCCGATGGTCGCC
CTGACCCTGGCGGGCAGCAATACCATCGGCAATGTGCCGCTGATCACGCTTTGGCTGTCGATCCTGCCCGCCGCCCCGAC
CGAGGCGCTGTATCGGCTGGCGGTCTTTTCGACGCTGGCGGGGAATTTCCTGCTGATCGGGTCGATCGCCAATCTAATCG
TCGCCGATCAGGCCGCCCGCCAGGGGGTAAGCCTGGGGTTTCTCGATCATGCCCGTTGCGGGGTGCCGATGACGCTGCTG
TCGCTGGGGTTCGCTTGGGGATGGTTCGCCCTGATCGCCTGA

Upstream 100 bases:

>100_bases
GTAACGCTACGCCGATGATCAGACCGGCGGCGCCCGGCTCTTTACAAGGGCGGCGGAAAGGGGCAGGCAGAAGGGCCTTT
TTCCTGCCCGCCGGGTCGCC

Downstream 100 bases:

>100_bases
ATGACGGCCGCTAAGGGATTCTTTACCCCCCGGCGATGAAATGCCTTTTTCACGGACCATCCGGGGCGGAGTTTTTTCAG
ATGACGGCCGACAGCGGCTC

Product: membrane anion transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MDLFILAVFIATYLGMALGRVPGLGVDRTGIALLAAIVLQTVAPRDGAALVAAIDFETLAILFGLMVVSIQFAACGFHDR
CAHWLANAACGPFVLLALVVGVAGGLAALLTNDVVALAMTPMLTRGLMARGLDPKPYLIALAGAANAGSAATLIGNPQNI
LIAQTGDLDLLPFLGACLPPALIGMACCWACVAVIWRAALRRPAVPPAAPPAAPPATMAPPAVDRSGLIKGLVATALLLV
LFLTPLDRATAALIVAGLILTSRRLRSRDTLGLVDWQLLILFVGLFVVVDSFTATGLPSLLLDAATTRGLDPLATGPMVA
LTLAGSNTIGNVPLITLWLSILPAAPTEALYRLAVFSTLAGNFLLIGSIANLIVADQAARQGVSLGFLDHARCGVPMTLL
SLGFAWGWFALIA

Sequences:

>Translated_413_residues
MDLFILAVFIATYLGMALGRVPGLGVDRTGIALLAAIVLQTVAPRDGAALVAAIDFETLAILFGLMVVSIQFAACGFHDR
CAHWLANAACGPFVLLALVVGVAGGLAALLTNDVVALAMTPMLTRGLMARGLDPKPYLIALAGAANAGSAATLIGNPQNI
LIAQTGDLDLLPFLGACLPPALIGMACCWACVAVIWRAALRRPAVPPAAPPAAPPATMAPPAVDRSGLIKGLVATALLLV
LFLTPLDRATAALIVAGLILTSRRLRSRDTLGLVDWQLLILFVGLFVVVDSFTATGLPSLLLDAATTRGLDPLATGPMVA
LTLAGSNTIGNVPLITLWLSILPAAPTEALYRLAVFSTLAGNFLLIGSIANLIVADQAARQGVSLGFLDHARCGVPMTLL
SLGFAWGWFALIA
>Mature_413_residues
MDLFILAVFIATYLGMALGRVPGLGVDRTGIALLAAIVLQTVAPRDGAALVAAIDFETLAILFGLMVVSIQFAACGFHDR
CAHWLANAACGPFVLLALVVGVAGGLAALLTNDVVALAMTPMLTRGLMARGLDPKPYLIALAGAANAGSAATLIGNPQNI
LIAQTGDLDLLPFLGACLPPALIGMACCWACVAVIWRAALRRPAVPPAAPPAAPPATMAPPAVDRSGLIKGLVATALLLV
LFLTPLDRATAALIVAGLILTSRRLRSRDTLGLVDWQLLILFVGLFVVVDSFTATGLPSLLLDAATTRGLDPLATGPMVA
LTLAGSNTIGNVPLITLWLSILPAAPTEALYRLAVFSTLAGNFLLIGSIANLIVADQAARQGVSLGFLDHARCGVPMTLL
SLGFAWGWFALIA

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=140, Percent_Identity=35, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1787039, Length=382, Percent_Identity=29.0575916230367, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85724998, Length=428, Percent_Identity=23.1308411214953, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62484377, Length=428, Percent_Identity=23.1308411214953, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 42510; Mature: 42510

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFILAVFIATYLGMALGRVPGLGVDRTGIALLAAIVLQTVAPRDGAALVAAIDFETLA
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHH
ILFGLMVVSIQFAACGFHDRCAHWLANAACGPFVLLALVVGVAGGLAALLTNDVVALAMT
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PMLTRGLMARGLDPKPYLIALAGAANAGSAATLIGNPQNILIAQTGDLDLLPFLGACLPP
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHH
ALIGMACCWACVAVIWRAALRRPAVPPAAPPAAPPATMAPPAVDRSGLIKGLVATALLLV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LFLTPLDRATAALIVAGLILTSRRLRSRDTLGLVDWQLLILFVGLFVVVDSFTATGLPSL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLDAATTRGLDPLATGPMVALTLAGSNTIGNVPLITLWLSILPAAPTEALYRLAVFSTLA
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GNFLLIGSIANLIVADQAARQGVSLGFLDHARCGVPMTLLSLGFAWGWFALIA
CCEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLFILAVFIATYLGMALGRVPGLGVDRTGIALLAAIVLQTVAPRDGAALVAAIDFETLA
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHH
ILFGLMVVSIQFAACGFHDRCAHWLANAACGPFVLLALVVGVAGGLAALLTNDVVALAMT
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PMLTRGLMARGLDPKPYLIALAGAANAGSAATLIGNPQNILIAQTGDLDLLPFLGACLPP
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHH
ALIGMACCWACVAVIWRAALRRPAVPPAAPPAAPPATMAPPAVDRSGLIKGLVATALLLV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LFLTPLDRATAALIVAGLILTSRRLRSRDTLGLVDWQLLILFVGLFVVVDSFTATGLPSL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLDAATTRGLDPLATGPMVALTLAGSNTIGNVPLITLWLSILPAAPTEALYRLAVFSTLA
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GNFLLIGSIANLIVADQAARQGVSLGFLDHARCGVPMTLLSLGFAWGWFALIA
CCEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]