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The map label for this gene is cph2 [H]

Identifier: 82702684

GI number: 82702684

Start: 1781194

End: 1782432

Strand: Reverse

Name: cph2 [H]

Synonym: Nmul_A1555

Alternate gene names: 82702684

Gene position: 1782432-1781194 (Counterclockwise)

Preceding gene: 82702685

Following gene: 82702681

Centisome position: 55.98

GC content: 53.75

Gene sequence:

>1239_bases
ATGGTCGAACGATCGGCAGTGAAGATTCTGGTGCTTGACGATGAGTCTTTCATGCTCAAGCTGTTGAATCGCATTTTATC
CAATCTCGGATATGCCTCGATCACGCTGTGTGATAGCGGGGGGACCGCGCTGGAGAAAATAGCCAATACGGACGCTGATA
CAGTACCCGATGTGATACTGCTGGATCTCAACATGCCCGGAATGGATGGGATCGAGTTTGTGCGGCACCTCGTGGATCTT
CACTATCCCGGCAGCCTCATATTGGTCAGTGGTGAGGATGAACGCATACTTCAGACCACTGAAAAACTCGTGCGTGCTCA
CAAAATCCCCATATTGGGTTACCTGCATAAACCCGTGACGCCTGACGCTCTGGCTGCCATGCTGGGAAAGTGGGCGCCGC
CTTCCGCCAGTGCCCCAGGTACAGCGAAGAAAGTCTACAGCGCGGATGAGCTTCGTGCCGCCCTAAAAGAGAGTGAACTG
ATCAACTATTATCAGCCCAAGGTCGCAGTGGCGAGTGGTGAAGTGGTCGGCGTAGAGACACTTGTAAGATGGCGTCACCC
TAGGGACGGAATAGTATTTCCAGATCAGTTCATTGGAGTGGCGGAAGCTTCAGGGTTGATCGATGATTTGACTCAGACCG
TATTTACTGCCGCCATGACTCAGGCAAAAGCCTGGCAGGAAGCCAGGCTGCCACTGCGGATTGCCGTCAACGTTTCCATG
GATAACCTCGCGTCGATCGATTTTCTGAATTTTGTGGCGGAAGCCGCGGCAAAGGAGGGGATAGCCCCGCAAAATGTGGT
GCTGGAAGTAACTGAAAGCCGACTGATGCAGGATACACGGGCGCCCCTTGAGATTCTGACGCGGCTGCGTTTGAAGCGTT
TCCGCCTTTCCATCGATGATTTTGGCACAGGGCATTCATCACTGGCCCAGTTACGCGACATTCCTTTCGACGAACTCAAG
ATAGATCAGGGTTTCGTACATCGCGCATCGACGGATGAGACCTTGCGGGCAATTTACGACGCGAGCTTGTCCCTGGCACG
ACAATTGAATATGGAAGTCGTGGCGGAAGGCGTACAGGATCAGGAGGATTGGGAACTTCTGCGCCGTACAGGGTGCGATC
TTGCGCAAGGAGCTTTTGTCTCGCGCCCTCTGCTGCCGGAGGATGTGCCTGGCTGGATAGAACTGTGGCGGGAACGGGTT
CGAACCCAACTTTTTCCGAGGGAAGATGCAAAGGAATAA

Upstream 100 bases:

>100_bases
TCGGCTCATTGGCATAATATCGTCGGCTGATAGACAGGTTGCCCCCAGCGATGTTCGAATTCAGAAACCTGACTGAACAA
TAACTGAAAAGATAAACGTT

Downstream 100 bases:

>100_bases
TCGGCAGGGCGAGAGACAGAAGCAATCTCCGCGGGAATGACGGGAGCATCCGCAGTTTTCAGTCTTTCACGCCACTTGCC
CAGTCCGCGGATCCGTTTGT

Product: response regulator receiver/diguanylate phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MVERSAVKILVLDDESFMLKLLNRILSNLGYASITLCDSGGTALEKIANTDADTVPDVILLDLNMPGMDGIEFVRHLVDL
HYPGSLILVSGEDERILQTTEKLVRAHKIPILGYLHKPVTPDALAAMLGKWAPPSASAPGTAKKVYSADELRAALKESEL
INYYQPKVAVASGEVVGVETLVRWRHPRDGIVFPDQFIGVAEASGLIDDLTQTVFTAAMTQAKAWQEARLPLRIAVNVSM
DNLASIDFLNFVAEAAAKEGIAPQNVVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDDFGTGHSSLAQLRDIPFDELK
IDQGFVHRASTDETLRAIYDASLSLARQLNMEVVAEGVQDQEDWELLRRTGCDLAQGAFVSRPLLPEDVPGWIELWRERV
RTQLFPREDAKE

Sequences:

>Translated_412_residues
MVERSAVKILVLDDESFMLKLLNRILSNLGYASITLCDSGGTALEKIANTDADTVPDVILLDLNMPGMDGIEFVRHLVDL
HYPGSLILVSGEDERILQTTEKLVRAHKIPILGYLHKPVTPDALAAMLGKWAPPSASAPGTAKKVYSADELRAALKESEL
INYYQPKVAVASGEVVGVETLVRWRHPRDGIVFPDQFIGVAEASGLIDDLTQTVFTAAMTQAKAWQEARLPLRIAVNVSM
DNLASIDFLNFVAEAAAKEGIAPQNVVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDDFGTGHSSLAQLRDIPFDELK
IDQGFVHRASTDETLRAIYDASLSLARQLNMEVVAEGVQDQEDWELLRRTGCDLAQGAFVSRPLLPEDVPGWIELWRERV
RTQLFPREDAKE
>Mature_412_residues
MVERSAVKILVLDDESFMLKLLNRILSNLGYASITLCDSGGTALEKIANTDADTVPDVILLDLNMPGMDGIEFVRHLVDL
HYPGSLILVSGEDERILQTTEKLVRAHKIPILGYLHKPVTPDALAAMLGKWAPPSASAPGTAKKVYSADELRAALKESEL
INYYQPKVAVASGEVVGVETLVRWRHPRDGIVFPDQFIGVAEASGLIDDLTQTVFTAAMTQAKAWQEARLPLRIAVNVSM
DNLASIDFLNFVAEAAAKEGIAPQNVVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDDFGTGHSSLAQLRDIPFDELK
IDQGFVHRASTDETLRAIYDASLSLARQLNMEVVAEGVQDQEDWELLRRTGCDLAQGAFVSRPLLPEDVPGWIELWRERV
RTQLFPREDAKE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=248, Percent_Identity=37.9032258064516, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=35.6275303643725, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=35.8333333333333, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=32.1285140562249, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=32.6848249027237, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786507, Length=287, Percent_Identity=32.0557491289199, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=28.8617886178862, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI226510982, Length=247, Percent_Identity=34.0080971659919, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=30.7377049180328, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=29.9595141700405, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1788849, Length=241, Percent_Identity=30.7053941908714, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=28.9795918367347, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45704; Mature: 45704

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERSAVKILVLDDESFMLKLLNRILSNLGYASITLCDSGGTALEKIANTDADTVPDVIL
CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCEEE
LDLNMPGMDGIEFVRHLVDLHYPGSLILVSGEDERILQTTEKLVRAHKIPILGYLHKPVT
EECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
PDALAAMLGKWAPPSASAPGTAKKVYSADELRAALKESELINYYQPKVAVASGEVVGVET
HHHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHH
LVRWRHPRDGIVFPDQFIGVAEASGLIDDLTQTVFTAAMTQAKAWQEARLPLRIAVNVSM
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
DNLASIDFLNFVAEAAAKEGIAPQNVVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC
FGTGHSSLAQLRDIPFDELKIDQGFVHRASTDETLRAIYDASLSLARQLNMEVVAEGVQD
CCCCHHHHHHHHCCCHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
QEDWELLRRTGCDLAQGAFVSRPLLPEDVPGWIELWRERVRTQLFPREDAKE
HHHHHHHHHCCCCHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVERSAVKILVLDDESFMLKLLNRILSNLGYASITLCDSGGTALEKIANTDADTVPDVIL
CCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCEEE
LDLNMPGMDGIEFVRHLVDLHYPGSLILVSGEDERILQTTEKLVRAHKIPILGYLHKPVT
EECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
PDALAAMLGKWAPPSASAPGTAKKVYSADELRAALKESELINYYQPKVAVASGEVVGVET
HHHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHH
LVRWRHPRDGIVFPDQFIGVAEASGLIDDLTQTVFTAAMTQAKAWQEARLPLRIAVNVSM
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
DNLASIDFLNFVAEAAAKEGIAPQNVVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHC
FGTGHSSLAQLRDIPFDELKIDQGFVHRASTDETLRAIYDASLSLARQLNMEVVAEGVQD
CCCCHHHHHHHHCCCHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
QEDWELLRRTGCDLAQGAFVSRPLLPEDVPGWIELWRERVRTQLFPREDAKE
HHHHHHHHHCCCCHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]