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The map label for this gene is pcbC [H]

Identifier: 78779654

GI number: 78779654

Start: 1181364

End: 1182422

Strand: Reverse

Name: pcbC [H]

Synonym: PMT9312_1271

Alternate gene names: 78779654

Gene position: 1182422-1181364 (Counterclockwise)

Preceding gene: 78779655

Following gene: 78779653

Centisome position: 69.18

GC content: 37.77

Gene sequence:

>1059_bases
GTGTTACAAACTTACGGAAAATCTGATGTCACCTATGACTGGTACGCAGGAAATTCTGGTGTTGTTGGCCGTTCAGGTAA
ATTCATAGCTTCTCACGCTGCTCATGCAGGACTTATGATGTTTTGGGCAGGTGCTTTTGGATTATTTGAATTAGCTCGTT
ACGATGCCAGTATTCCAATGGGTGCTCAAAAATTAATTTGTTTACCTCACCTCGCAGGTCTTGGGATAGGTGGTATTGAA
AATGGAGTTATTACTGAAACATATGGAATTGTTGTAATTTGCACATTGCATCTAATTTTTTCTGCTGTATTGGGTGCTGG
AGGATTATTACATTCCACCAAATTTGCCGGGGATCTTGCAGATTATTCTGAAACCAGTAAGCCAAGAAAATTCGATTTTG
AATGGGATGATCCAGATAAATTAACTTTCATTCTTGGCCATCATCTAATCTTCTTAGGTATAGGAGCTATTTGGTTCGTG
GAATGGGCTAAATGGCATGGGATCTATGACCCTGCAATTGGTTCAACAAGACAAGTAATTTACAACTTGGATATTGCTGC
TATTTGGAATCATCAATTTGATTTTTTAAAAATAGATAGTCTAGAAGATGTTCTGGGAGGTCATGCATTTCTAGCCTTTT
TAGAAATAATTGGCGGAATTTTCCACATTTTTACTAAGCAATTTGGAGAATATACAGAATTTAAAGGTAAAGGGTTACTA
GGTGCTGAAGCTATTTTGTCTTACTCAGTAGTAGGCGTTTCCTATATGGCCTTTGTCGCGGCATTCTGGTGTGCTTCAAA
CACAACAATATACCCAGTTGATTTATATGGAGAGCCATTAAAGCTTCAATTTGAGTTCGCTCCTTATTTTACGGACACAG
TTGACTTAGGTTCTGGCGTATATAGTGCAAGAGCTTGGCTTGCAAATGCTCATTTCTATTTGGGATTCTTTTTCTTGCAA
GGTCATTTATGGCATGCTCTAAGAGCTATGGGGTTTGACTTTAAGAAAATTGGTCAAGCTTTTGACAATATGGAAAACGC
AAAAATTACACAAAAATAG

Upstream 100 bases:

>100_bases
CATAATATGTTTTTTTTACATAAGTAATTAAATCTGTAAAGAACATGTAAAAACCCATACTGATAAGCAATATGCTCAAC
ATGCTGTTTATTTAAATCAA

Downstream 100 bases:

>100_bases
TTCAATCTGATAAAAAACCTCTCCTCTAGTAGGGAGGTTTTTTTTTGTAGAATTATTTCACTTATTAAAAATTTAATGGA
GAATTCAAGACAAATTAATT

Product: chlorophyll a/b binding light harvesting protein PcbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIASHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKLICLPHLAGLGIGGIE
NGVITETYGIVVICTLHLIFSAVLGAGGLLHSTKFAGDLADYSETSKPRKFDFEWDDPDKLTFILGHHLIFLGIGAIWFV
EWAKWHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVLGGHAFLAFLEIIGGIFHIFTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGVYSARAWLANAHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENAKITQK

Sequences:

>Translated_352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIASHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKLICLPHLAGLGIGGIE
NGVITETYGIVVICTLHLIFSAVLGAGGLLHSTKFAGDLADYSETSKPRKFDFEWDDPDKLTFILGHHLIFLGIGAIWFV
EWAKWHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVLGGHAFLAFLEIIGGIFHIFTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGVYSARAWLANAHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENAKITQK
>Mature_352_residues
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIASHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKLICLPHLAGLGIGGIE
NGVITETYGIVVICTLHLIFSAVLGAGGLLHSTKFAGDLADYSETSKPRKFDFEWDDPDKLTFILGHHLIFLGIGAIWFV
EWAKWHGIYDPAIGSTRQVIYNLDIAAIWNHQFDFLKIDSLEDVLGGHAFLAFLEIIGGIFHIFTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGVYSARAWLANAHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENAKITQK

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38979; Mature: 38979

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIASHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKLICLPHLAGLGIGGIENGVITETYGIVVICTLHLIFSAVLGAGGLLHSTKFAGDLA
CCHHHEEHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
DYSETSKPRKFDFEWDDPDKLTFILGHHLIFLGIGAIWFVEWAKWHGIYDPAIGSTRQVI
HHHHCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
YNLDIAAIWNHQFDFLKIDSLEDVLGGHAFLAFLEIIGGIFHIFTKQFGEYTEFKGKGLL
EECCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHCCCCH
YSARAWLANAHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNMENAKITQK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLQTYGKSDVTYDWYAGNSGVVGRSGKFIASHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKLICLPHLAGLGIGGIENGVITETYGIVVICTLHLIFSAVLGAGGLLHSTKFAGDLA
CCHHHEEHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
DYSETSKPRKFDFEWDDPDKLTFILGHHLIFLGIGAIWFVEWAKWHGIYDPAIGSTRQVI
HHHHCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
YNLDIAAIWNHQFDFLKIDSLEDVLGGHAFLAFLEIIGGIFHIFTKQFGEYTEFKGKGLL
EECCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLQFEFAPYFTDTVDLGSGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHCCCCH
YSARAWLANAHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNMENAKITQK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10725393; 12917486; 11575723 [H]