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The map label for this gene is deoC [H]

Identifier: 78778780

GI number: 78778780

Start: 374947

End: 375606

Strand: Reverse

Name: deoC [H]

Synonym: PMT9312_0395

Alternate gene names: 78778780

Gene position: 375606-374947 (Counterclockwise)

Preceding gene: 78778781

Following gene: 78778779

Centisome position: 21.98

GC content: 27.73

Gene sequence:

>660_bases
ATGCCCAATATTGAATATGAATTAAACGAGAAAATTCATGCGATTATTATTAACCCATACCTCACATGGGATGATTTCTG
TGCAAATTGCGATTTAATAAAAAAATATAATATCAAGAATATTTCTACTTCTCTTAATTATTTATCTGATTTAAAAAACT
GTTTAAGTAATTACAGCGCAAATATAAACGCGCTCATTTCTTATCCTTTAGCAGATATGCCAGTTTCATTTATTGAAGAA
TTAGTTTGTTTTGCAAAAGATAAAGGGGCAAACGGAATTGAGTATATCCCAAACTTTATCAATTTATCCAAGAAAAATTC
AGAAACTTTTGCTGCTGAAATTGAGCAAGTTAAATTATCCGGATTACCAGTTACATTAATCATAAATAAATCAAAACTAG
AAGAAAAAATTTTGTATAATGCTATAGACATATTTCTAGAATTAGGAATAAAAAATTTTCAATTCGGAGACGGATTTGGT
CCTCCAACTACATTTAATGATGTAGCAGAAATTTTAAAAATAACTGGCAACCAAAATCAAATTAAAATTGTAGGTGGTTT
TAGAAAACTAAATCAAGTTATTGATTTGTTGGATGCTGGAATTAATTTCATAGGGACTTCTAATTTTCGTGAGATATTCG
AAGAAGTAAAAGTTATTTAA

Upstream 100 bases:

>100_bases
TTATGTTTTTCGAAATAAGAAAAACAATGAACTTCAAGTTATATATAAAAGAAATCATGGAGGTTATGGACTCATTCAAT
CTAAATAACTTTAAATTTAA

Downstream 100 bases:

>100_bases
ATGTCCGGTTCTGGTGAGTGCAGATTAAAGGGTCTCTGTATTAAAGCTTCTCCGCTAGGCGAGAATGATAGATTAATTAC
TATCCTCACAGATGAGCGGG

Product: putative deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPNIEYELNEKIHAIIINPYLTWDDFCANCDLIKKYNIKNISTSLNYLSDLKNCLSNYSANINALISYPLADMPVSFIEE
LVCFAKDKGANGIEYIPNFINLSKKNSETFAAEIEQVKLSGLPVTLIINKSKLEEKILYNAIDIFLELGIKNFQFGDGFG
PPTTFNDVAEILKITGNQNQIKIVGGFRKLNQVIDLLDAGINFIGTSNFREIFEEVKVI

Sequences:

>Translated_219_residues
MPNIEYELNEKIHAIIINPYLTWDDFCANCDLIKKYNIKNISTSLNYLSDLKNCLSNYSANINALISYPLADMPVSFIEE
LVCFAKDKGANGIEYIPNFINLSKKNSETFAAEIEQVKLSGLPVTLIINKSKLEEKILYNAIDIFLELGIKNFQFGDGFG
PPTTFNDVAEILKITGNQNQIKIVGGFRKLNQVIDLLDAGINFIGTSNFREIFEEVKVI
>Mature_218_residues
PNIEYELNEKIHAIIINPYLTWDDFCANCDLIKKYNIKNISTSLNYLSDLKNCLSNYSANINALISYPLADMPVSFIEEL
VCFAKDKGANGIEYIPNFINLSKKNSETFAAEIEQVKLSGLPVTLIINKSKLEEKILYNAIDIFLELGIKNFQFGDGFGP
PTTFNDVAEILKITGNQNQIKIVGGFRKLNQVIDLLDAGINFIGTSNFREIFEEVKVI

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24658; Mature: 24526

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNIEYELNEKIHAIIINPYLTWDDFCANCDLIKKYNIKNISTSLNYLSDLKNCLSNYSA
CCCCCCCCCCCEEEEEECCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
NINALISYPLADMPVSFIEELVCFAKDKGANGIEYIPNFINLSKKNSETFAAEIEQVKLS
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHCC
GLPVTLIINKSKLEEKILYNAIDIFLELGIKNFQFGDGFGPPTTFNDVAEILKITGNQNQ
CCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCE
IKIVGGFRKLNQVIDLLDAGINFIGTSNFREIFEEVKVI
EEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PNIEYELNEKIHAIIINPYLTWDDFCANCDLIKKYNIKNISTSLNYLSDLKNCLSNYSA
CCCCCCCCCCEEEEEECCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
NINALISYPLADMPVSFIEELVCFAKDKGANGIEYIPNFINLSKKNSETFAAEIEQVKLS
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCCCHHHHHHHHHHHCC
GLPVTLIINKSKLEEKILYNAIDIFLELGIKNFQFGDGFGPPTTFNDVAEILKITGNQNQ
CCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCE
IKIVGGFRKLNQVIDLLDAGINFIGTSNFREIFEEVKVI
EEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]