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The map label for this gene is lrtA [H]

Identifier: 78778781

GI number: 78778781

Start: 375619

End: 376203

Strand: Reverse

Name: lrtA [H]

Synonym: PMT9312_0396

Alternate gene names: 78778781

Gene position: 376203-375619 (Counterclockwise)

Preceding gene: 78778787

Following gene: 78778780

Centisome position: 22.01

GC content: 29.23

Gene sequence:

>585_bases
ATGAAAATTTTAATCCATGGAAAGAATCTTGAGCTCACTGGAGCATTAAAAGAATATACTCAGGCAAAGATAGAAAAAGC
AACACATCACTATAAGGATATCGTGAAAGAAGCAGACATACACCTTTCAATAGAAAAGAACCCAAGTGTCTCATTGCAAA
CTGCAGAAGTTACTATTTTTGCAAATGGTACTGTAATTAGAGCTGAAGAAAAAACTGAAAATCTTTACTCAAGCATTGAT
TTAGTTTCGAATAAACTTTGTAGAAAATTGCGTAAATACAAAGAAAGAAACTATAAAACAAACTATATTAATCAATTTAA
AAATAATGAGTCTTTCCCAATTGAAAGTGCGGATTCAAACGTTTTAGATAAAACTTTATTTAAACAAGGAAGGGAAGCTA
GTCTGCCTGAGCCATCTATTAAAAATAAATACTTTGAAATGAACCCAATTTCATCAGAAGAAGCAAGAAAACAATTAGAT
CTAATTGATCATGATTTTTATGTTTTTCGAAATAAGAAAAACAATGAACTTCAAGTTATATATAAAAGAAATCATGGAGG
TTATGGACTCATTCAATCTAAATAA

Upstream 100 bases:

>100_bases
TCATTGAAACAAGAAATATTATCAGGTTGTTTAATTATTGCTGTTCTATTAACCATATTTAAGTAGATTTAGAAAGTAAG
TAAATATTTTTAGATTTGTT

Downstream 100 bases:

>100_bases
CTTTAAATTTAAATGCCCAATATTGAATATGAATTAAACGAGAAAATTCATGCGATTATTATTAACCCATACCTCACATG
GGATGATTTCTGTGCAAATT

Product: SSU ribosomal protein S30P / sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSLQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNYKTNYINQFKNNESFPIESADSNVLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK

Sequences:

>Translated_194_residues
MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSLQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNYKTNYINQFKNNESFPIESADSNVLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK
>Mature_194_residues
MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSLQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNYKTNYINQFKNNESFPIESADSNVLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22528; Mature: 22528

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSLQTAEVTIF
CEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE
ANGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNYINQFKNNESFPIESADSN
ECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCH
VLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEE
YKRNHGGYGLIQSK
EEECCCCEEEEECC
>Mature Secondary Structure
MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIEKNPSVSLQTAEVTIF
CEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE
ANGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNYINQFKNNESFPIESADSN
ECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCH
VLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEE
YKRNHGGYGLIQSK
EEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8063707 [H]