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The map label for this gene is recO [H]

Identifier: 78778779

GI number: 78778779

Start: 374161

End: 374946

Strand: Reverse

Name: recO [H]

Synonym: PMT9312_0394

Alternate gene names: 78778779

Gene position: 374946-374161 (Counterclockwise)

Preceding gene: 78778780

Following gene: 78778778

Centisome position: 21.94

GC content: 33.72

Gene sequence:

>786_bases
ATGTCCGGTTCTGGTGAGTGCAGATTAAAGGGTCTCTGTATTAAAGCTTCTCCGCTAGGCGAGAATGATAGATTAATTAC
TATCCTCACAGATGAGCGGGGGATTGTGCGATTAGCAGTACCTGGTGCTAGACGTCCAAAAAGTAGTCTTGCAGCAGCCA
CTCCCTTAAATTATTTAAGTTTGCAGATTTTTGGAAAAAGAAATCTTAAATCTGTACGGCAAATTAAAATATTAAAAAGC
TATGCCGGTCTAGGGAAAAATATTGAATGTCTTGCAGCCGCGCAAGCAATAACAGAATTAACATTTTTATTAGTTGGTAA
TGATGACGAGCAACAAAACTATTTATCTTGTGTTCTTGCTCATTTAGATAGGATTTATTTATATGAAGTTTCTAAAGAAG
AGGATATTAAAATGCTCTGTATTAGTATTCAATCTTTAATCCATCTATTAGCCATCGGAGGAATTAATTTACCAATTCAT
CATTGCTGTAAAACTGGAGAACCAATAATTCCTCCTTTAGGAAATTGGGAATGGAATTGTTATTATTTGCCAAATGAAGG
TTTTTCATCAATAGAAGATCCTCAAAGTAATCTAAAAATAAATGCATCTGAGGTTGCTTTATTACAAAGACTTCTTTTCC
CCGAATTACCAATAAAATCTAATGGAGAGTTATTGGGACCTAAAAAAGTCTGGCTTAAAATATTATTTATTATTGAGACT
TGGATCTCTACTCAATTAGAGAAGGATCTATCTTCACTAAAAATGTTGAGGGAAATATATAGTTAG

Upstream 100 bases:

>100_bases
TAGAAAACTAAATCAAGTTATTGATTTGTTGGATGCTGGAATTAATTTCATAGGGACTTCTAATTTTCGTGAGATATTCG
AAGAAGTAAAAGTTATTTAA

Downstream 100 bases:

>100_bases
CATTTTTATGAACATTAATAAATTTAAAAATTATGATCATGGCGGGTCTGACTGTTAACTTTATAAATAGCTAATTCAAT
TAATGTGGTTCATATTGCCT

Product: putative recombination protein O

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSGSGECRLKGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLSLQIFGKRNLKSVRQIKILKS
YAGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLAHLDRIYLYEVSKEEDIKMLCISIQSLIHLLAIGGINLPIH
HCCKTGEPIIPPLGNWEWNCYYLPNEGFSSIEDPQSNLKINASEVALLQRLLFPELPIKSNGELLGPKKVWLKILFIIET
WISTQLEKDLSSLKMLREIYS

Sequences:

>Translated_261_residues
MSGSGECRLKGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLSLQIFGKRNLKSVRQIKILKS
YAGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLAHLDRIYLYEVSKEEDIKMLCISIQSLIHLLAIGGINLPIH
HCCKTGEPIIPPLGNWEWNCYYLPNEGFSSIEDPQSNLKINASEVALLQRLLFPELPIKSNGELLGPKKVWLKILFIIET
WISTQLEKDLSSLKMLREIYS
>Mature_260_residues
SGSGECRLKGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLSLQIFGKRNLKSVRQIKILKSY
AGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLAHLDRIYLYEVSKEEDIKMLCISIQSLIHLLAIGGINLPIHH
CCKTGEPIIPPLGNWEWNCYYLPNEGFSSIEDPQSNLKINASEVALLQRLLFPELPIKSNGELLGPKKVWLKILFIIETW
ISTQLEKDLSSLKMLREIYS

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29145; Mature: 29013

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSGECRLKGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLS
CCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHCCCCEEE
LQIFGKRNLKSVRQIKILKSYAGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLA
EEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
HLDRIYLYEVSKEEDIKMLCISIQSLIHLLAIGGINLPIHHCCKTGEPIIPPLGNWEWNC
HHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEEE
YYLPNEGFSSIEDPQSNLKINASEVALLQRLLFPELPIKSNGELLGPKKVWLKILFIIET
EECCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHH
WISTQLEKDLSSLKMLREIYS
HHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SGSGECRLKGLCIKASPLGENDRLITILTDERGIVRLAVPGARRPKSSLAAATPLNYLS
CCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHCCCCEEE
LQIFGKRNLKSVRQIKILKSYAGLGKNIECLAAAQAITELTFLLVGNDDEQQNYLSCVLA
EEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH
HLDRIYLYEVSKEEDIKMLCISIQSLIHLLAIGGINLPIHHCCKTGEPIIPPLGNWEWNC
HHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEEE
YYLPNEGFSSIEDPQSNLKINASEVALLQRLLFPELPIKSNGELLGPKKVWLKILFIIET
EECCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHH
WISTQLEKDLSSLKMLREIYS
HHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA