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The map label for this gene is crtB [H]

Identifier: 78778531

GI number: 78778531

Start: 140056

End: 140964

Strand: Reverse

Name: crtB [H]

Synonym: PMT9312_0145

Alternate gene names: 78778531

Gene position: 140964-140056 (Counterclockwise)

Preceding gene: 78778532

Following gene: 78778528

Centisome position: 8.25

GC content: 33.99

Gene sequence:

>909_bases
TTGAAAAATTCAATTTCTCAACTAGATCAAGCATATGAAATATGCCGTAAAGAAACTCAACAATGGGCTAAAACCTTTTA
CTTGGGAACTCTTCTACTACCAGTAGAAAAGAGAAAAGCTATTTGGGCTATTTATGTATGGTGCAGAAGAACAGATGAAA
TAATGGATAGCTTAGAAGCTTCAACTAAATCGCAAGATGAGCTTTCAGATAATTTAGATGCATGGGAAGAAAATACAAAG
AATGTATTCAAAGGGAATATTAAATCTGAACTAGATTCAGTTCTATTAGATACCATCGAAAAATATCCACAAAGTATTCA
ACCCTACCTAGACATGATAGAAGGTCAGAGGATGGATCTTAATAAATTCAGATACAAAGATTTTGATGAATTAAAACTCT
ATTGTTATAGAGTGGCAGGGACTGTTGGTTTAATGACTCAGAATGTCATGGGCATTGATAAAGCTTATACATCCGCACCA
TGGAGTTCTAAGCCTGACCCCTCAGAAGCAGCTATAGCTTTAGGAATAGCCAACCAATTAACTAATATATTGAGAGATGT
AGGAGAAGACAGAGAACGAGGTAGAATTTATCTCCCACAAGCAGATATTGAAAAATTTAATTATTCTGAAGAAAAACTTT
TAAACGGCGAAATAAATAAACAATGGAAAGCATTGATGAAGTTTCAATTAAGTAGGGCTCGCGATTGGTTTCATAAATCT
GAAGAAGGGATTAAGTGGCTCTCCTCTGACGCAAGATGGCCAGTTTGGACATCGTTACGTCTTTACAGAGGAATATTAGA
TTCAATTGAAAGGTTAGACTATGATGTCTTTAATAATAGAGCTTTTGTAAAGAATTCAGTTAAAGCCTTTGAGATACCAA
TATCTTTTTTAATTTCTCGAATTAAATAA

Upstream 100 bases:

>100_bases
GGTAAATTATGCGCGGAGTCAATTAATAAAGAGTATTCCAAAAAACCCAAAAATGTTTCTTAAAAACATTAAAAAAATTT
CTAAATTCAGCTAAAACTTT

Downstream 100 bases:

>100_bases
CTAAGCAGGTGTCTTCTGATTAGCTAATAAATCTTTTAATTTAGACAGTTCTCCAGCCCATCTTGGATCAGGTGCTTCAA
GGTTAGGGGCGTCACTATGA

Product: squalene and phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKNSISQLDQAYEICRKETQQWAKTFYLGTLLLPVEKRKAIWAIYVWCRRTDEIMDSLEASTKSQDELSDNLDAWEENTK
NVFKGNIKSELDSVLLDTIEKYPQSIQPYLDMIEGQRMDLNKFRYKDFDELKLYCYRVAGTVGLMTQNVMGIDKAYTSAP
WSSKPDPSEAAIALGIANQLTNILRDVGEDRERGRIYLPQADIEKFNYSEEKLLNGEINKQWKALMKFQLSRARDWFHKS
EEGIKWLSSDARWPVWTSLRLYRGILDSIERLDYDVFNNRAFVKNSVKAFEIPISFLISRIK

Sequences:

>Translated_302_residues
MKNSISQLDQAYEICRKETQQWAKTFYLGTLLLPVEKRKAIWAIYVWCRRTDEIMDSLEASTKSQDELSDNLDAWEENTK
NVFKGNIKSELDSVLLDTIEKYPQSIQPYLDMIEGQRMDLNKFRYKDFDELKLYCYRVAGTVGLMTQNVMGIDKAYTSAP
WSSKPDPSEAAIALGIANQLTNILRDVGEDRERGRIYLPQADIEKFNYSEEKLLNGEINKQWKALMKFQLSRARDWFHKS
EEGIKWLSSDARWPVWTSLRLYRGILDSIERLDYDVFNNRAFVKNSVKAFEIPISFLISRIK
>Mature_302_residues
MKNSISQLDQAYEICRKETQQWAKTFYLGTLLLPVEKRKAIWAIYVWCRRTDEIMDSLEASTKSQDELSDNLDAWEENTK
NVFKGNIKSELDSVLLDTIEKYPQSIQPYLDMIEGQRMDLNKFRYKDFDELKLYCYRVAGTVGLMTQNVMGIDKAYTSAP
WSSKPDPSEAAIALGIANQLTNILRDVGEDRERGRIYLPQADIEKFNYSEEKLLNGEINKQWKALMKFQLSRARDWFHKS
EEGIKWLSSDARWPVWTSLRLYRGILDSIERLDYDVFNNRAFVKNSVKAFEIPISFLISRIK

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 35349; Mature: 35349

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSISQLDQAYEICRKETQQWAKTFYLGTLLLPVEKRKAIWAIYVWCRRTDEIMDSLEA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
STKSQDELSDNLDAWEENTKNVFKGNIKSELDSVLLDTIEKYPQSIQPYLDMIEGQRMDL
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
NKFRYKDFDELKLYCYRVAGTVGLMTQNVMGIDKAYTSAPWSSKPDPSEAAIALGIANQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
TNILRDVGEDRERGRIYLPQADIEKFNYSEEKLLNGEINKQWKALMKFQLSRARDWFHKS
HHHHHHHCCCHHCCEEECCCHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
EEGIKWLSSDARWPVWTSLRLYRGILDSIERLDYDVFNNRAFVKNSVKAFEIPISFLISR
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHCCCHHHHHHHHHHHHH
IK
CC
>Mature Secondary Structure
MKNSISQLDQAYEICRKETQQWAKTFYLGTLLLPVEKRKAIWAIYVWCRRTDEIMDSLEA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
STKSQDELSDNLDAWEENTKNVFKGNIKSELDSVLLDTIEKYPQSIQPYLDMIEGQRMDL
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
NKFRYKDFDELKLYCYRVAGTVGLMTQNVMGIDKAYTSAPWSSKPDPSEAAIALGIANQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
TNILRDVGEDRERGRIYLPQADIEKFNYSEEKLLNGEINKQWKALMKFQLSRARDWFHKS
HHHHHHHCCCHHCCEEECCCHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
EEGIKWLSSDARWPVWTSLRLYRGILDSIERLDYDVFNNRAFVKNSVKAFEIPISFLISR
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHCCCHHHHHHHHHHHHH
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8018713; 8905231 [H]