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The map label for this gene is pds [H]

Identifier: 78778532

GI number: 78778532

Start: 141002

End: 142399

Strand: Reverse

Name: pds [H]

Synonym: PMT9312_0146

Alternate gene names: 78778532

Gene position: 142399-141002 (Counterclockwise)

Preceding gene: 78778535

Following gene: 78778531

Centisome position: 8.33

GC content: 34.19

Gene sequence:

>1398_bases
ATGCGTGTTGTAATTGCTGGTGCTGGTTTAGCAGGTTTATCTTGCGCTAAATATCTAGTTGATAATGGTCACATTCCAAT
TGTGTTAGAAGCTAGAGATGTTCTAGGGGGGAAAGTCGCTGCTTGGAAAGATGATGATGGAGACTGGTATGAAACTGGTT
TGCATATATTCTTTGGAGCTTACCCTAATATGTTGCAACTTTTCAAGGAATTAGATATTGAAGATAGACTTCAATGGAAA
AGCCATTCAATGATTTTCAATCAACCATCTGAGCCAGGAACTTACAGTAGATTTGACTTTCCAGATATACCAGCTCCCGT
AAATGGAGTTTCAGCAATATTAAGTAATAATGATATGCTTTCATGGAATGAAAAGATACTTTTTGGATTGGGTTTAGTAC
CTGCAATGTTAAGAGGTCAAAAGTATCTAGATAAATGTGATAGCAAATCATGGACTGATTGGCTCAAAGAACATAATATT
CCTGAAAGAGTTAATGACGAAGTTTTTATAGCCATGAGTAAAGCTTTAAATTTCATTGGGCCAGATGAAATATCATCTAC
AGTTTTATTAACAGCACTAAACAGATTTTTACAAGAAAAAAATGGTTCGAAAATGGCATTTCTTGACGGAGCTCCTCCAG
AAAGACTTTGCCAACCAATGGTCGACTATATAACCGCTCGTGGTGGAGAAGTTCACATGAATAGCCCATTAAGGCAAATC
AACCTAAATGAAGATAGCACTGTTAAAAGTTTTACTATTGCTTCTTTAAATGAAAACGAAAAGAAAGAGTTAACTGCGGA
CGCTTATGTTAGTGCAATGCCAGTAGATCTTTTTAAATTAATGATACCTGAACAATGGAAGGGGCTAGATGTTTTTTCTA
AATTAGATGGTTTAAATGGTGTGCCAGTTATTAATATTCATTTATGGTTTGACAAAAAATTAACAGATATTGACCATTTG
CTATTTAGCAGATCACCACTTCTCAGTGTTTATGCGGATATGAGCATTACATGTAAAGAATATGAAGATCCAAATAGATC
AATGCTTGAATTAGTTTTCGCACCAGCAAAAGATTGGATAAATAGAAGTGATCAAGATATTGTTGATGCAACTATGGAAG
AACTAAAAAAATTATTCCCAACGCATTTCATGGGCGATGAAAAGACAAAATTAAGAAAATATAAAGTAGTCAAAACTCCA
AGATCTGTTTATAAGGCAGTTCCTGGATGTCAAGAGTTTAGACCTAGTCAAAAATCTCCCATTAAAAATTTCTTTTTAGC
TGGTGATTATACAATGCAAAAATATTTAGCTTCTATGGAAGGAGCTGTTTTAAGTGGTAAATTATGCGCGGAGTCAATTA
ATAAAGAGTATTCCAAAAAACCCAAAAATGTTTCTTAA

Upstream 100 bases:

>100_bases
TTTTTTCCATAATTTTGCGAAATAATCAACGAAAAAAACTATAATGTCCTAACTTTAATGTAGCTTATTAGTAAGTGTTA
ATTTATTTATTAATTTAATA

Downstream 100 bases:

>100_bases
AAACATTAAAAAAATTTCTAAATTCAGCTAAAACTTTTTGAAAAATTCAATTTCTCAACTAGATCAAGCATATGAAATAT
GCCGTAAAGAAACTCAACAA

Product: three-step phytoene desaturase / zeta-carotene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLRQI
NLNEDSTVKSFTIASLNENEKKELTADAYVSAMPVDLFKLMIPEQWKGLDVFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDEKTKLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKKPKNVS

Sequences:

>Translated_465_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLRQI
NLNEDSTVKSFTIASLNENEKKELTADAYVSAMPVDLFKLMIPEQWKGLDVFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDEKTKLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKKPKNVS
>Mature_465_residues
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDSKSWTDWLKEHNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLRQI
NLNEDSTVKSFTIASLNENEKKELTADAYVSAMPVDLFKLMIPEQWKGLDVFSKLDGLNGVPVINIHLWFDKKLTDIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDEKTKLRKYKVVKTP
RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKKPKNVS

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 52490; Mature: 52490

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDSKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLRQI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCEEE
NLNEDSTVKSFTIASLNENEKKELTADAYVSAMPVDLFKLMIPEQWKGLDVFSKLDGLNG
ECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CEEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHC
NRSDQDIVDATMEELKKLFPTHFMGDEKTKLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP
CCCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCCCC
IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKKPKNVS
HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
SWNEKILFGLGLVPAMLRGQKYLDKCDSKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG
CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLRQI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCEEE
NLNEDSTVKSFTIASLNENEKKELTADAYVSAMPVDLFKLMIPEQWKGLDVFSKLDGLNG
ECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CEEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHC
NRSDQDIVDATMEELKKLFPTHFMGDEKTKLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP
CCCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHCCCCCCCC
IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKKPKNVS
HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]