Click here to switch to the map view.

The map label for this gene is sufC [C]

Identifier: 78778459

GI number: 78778459

Start: 78569

End: 79354

Strand: Reverse

Name: sufC [C]

Synonym: PMT9312_0074

Alternate gene names: 78778459

Gene position: 79354-78569 (Counterclockwise)

Preceding gene: 78778460

Following gene: 78778458

Centisome position: 4.64

GC content: 33.84

Gene sequence:

>786_bases
ATGCAAAGTAACATGAAAGAATCAGATCCAATTTTAGAAGTTCGAAATCTCTTTGCATCTACTGATAATCTTCCAATTTT
GAAGGGGGTTTCAATTACTGTCTACCCTGGAGAAATCCATGCCATTATGGGAAGAAATGGATGTGGTAAAAGTACTCTTT
CAAAAATTATTGCAGGACATCCCTTATATAACATTACAAATGGCGACATAAAATTATCAGGTGAAAATATTAACTCTCTC
GAACCTGAAGAAAGAGCTCAATCAGGAATTTTCCTTGGTTTCCAATATCCAATAGAAATTCCAGGCGTTAGTAATCTCGA
GTTTCTTAGAGTTTCAACAAATGCTAGAAGAAAATTCCTTAATAAAGAAGAATTAGATACTTTTGATTTTGAAGAATTAG
TTAAAGAAAAGTTGGAACTGGTAAAAATGGATAACGCATTCTTATCAAGAAGCGTAAATCAAGGATTTTCCGGAGGTGAA
AAGAAAAGAAACGAAATTCTGCAAATGGCTTTACTTGAGCCGAAGATAGCAATTTTAGATGAGACCGATTCTGGTCTAGA
CATTGACGCTCTTAGAATTGTCGCATCAGGAATTAAAAAAATATCTAATGCACAAACTGGAATTATATTAATTACTCACT
ATCAAAGATTATTAGATGAAATAGAACCAAATTATGTCCACGTTATGGCAGATGGACAAATCATAAAAACTGGCGGCAGT
GATCTTGCTTTAGAGCTTGAACGCAAAGGTTATGAATGGACTGATAACTTTGTAAAAGAGACGTAA

Upstream 100 bases:

>100_bases
ATTTAATCAATTACCTATGGAATTTGCTGCTGAAGCAGATAAGTTACTGGCTCTTAAACTCGAGGGCTCAGTAGGTTAAT
TAATCAATTTCTAAAGTGAA

Downstream 100 bases:

>100_bases
AATGGAAATTATTGAAAAAATAAAAACCAATAAATTAATTGATAATCCAACAGAAATACAAAAAATCTGTCTTCATAAAT
TACAATCAAACCCTCTCCCT

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQSNMKESDPILEVRNLFASTDNLPILKGVSITVYPGEIHAIMGRNGCGKSTLSKIIAGHPLYNITNGDIKLSGENINSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLELVKMDNAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMADGQIIKTGGS
DLALELERKGYEWTDNFVKET

Sequences:

>Translated_261_residues
MQSNMKESDPILEVRNLFASTDNLPILKGVSITVYPGEIHAIMGRNGCGKSTLSKIIAGHPLYNITNGDIKLSGENINSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLELVKMDNAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMADGQIIKTGGS
DLALELERKGYEWTDNFVKET
>Mature_261_residues
MQSNMKESDPILEVRNLFASTDNLPILKGVSITVYPGEIHAIMGRNGCGKSTLSKIIAGHPLYNITNGDIKLSGENINSL
EPEERAQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLELVKMDNAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMADGQIIKTGGS
DLALELERKGYEWTDNFVKET

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=229, Percent_Identity=27.0742358078603, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=28.8702928870293, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9961252, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21536378, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787972, Length=243, Percent_Identity=53.0864197530864, Blast_Score=284, Evalue=5e-78,
Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=32.258064516129, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87081791, Length=182, Percent_Identity=31.8681318681319, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787500, Length=236, Percent_Identity=27.5423728813559, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=25.5411255411255, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790467, Length=182, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=25.4310344827586, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789864, Length=238, Percent_Identity=26.890756302521, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=26.9565217391304, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082267, Length=162, Percent_Identity=28.3950617283951, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786654, Length=239, Percent_Identity=26.3598326359833, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786319, Length=188, Percent_Identity=29.2553191489362, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=30.0884955752212, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=232, Percent_Identity=30.1724137931034, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17539902, Length=221, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=242, Percent_Identity=29.3388429752066, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=228, Percent_Identity=29.3859649122807, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=230, Percent_Identity=28.695652173913, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=230, Percent_Identity=28.695652173913, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=230, Percent_Identity=28.695652173913, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=240, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=214, Percent_Identity=27.5700934579439, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=218, Percent_Identity=26.1467889908257, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=218, Percent_Identity=26.1467889908257, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=218, Percent_Identity=26.1467889908257, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=224, Percent_Identity=26.7857142857143, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29114; Mature: 29114

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSNMKESDPILEVRNLFASTDNLPILKGVSITVYPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCCCCCCHHHHHHHHHHCCCCCCEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
PLYNITNGDIKLSGENINSLEPEERAQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFL
CEEEECCCEEEECCCCCCCCCHHHHHCCCEEEEEECCEECCCCCCCEEEEECCHHHHHHC
NKEELDTFDFEELVKEKLELVKMDNAFLSRSVNQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMADGQIIKTGGS
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEEECCEEEEECCC
DLALELERKGYEWTDNFVKET
CEEEEEECCCCCCCHHHHCCC
>Mature Secondary Structure
MQSNMKESDPILEVRNLFASTDNLPILKGVSITVYPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCCCCCCHHHHHHHHHHCCCCCCEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
PLYNITNGDIKLSGENINSLEPEERAQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFL
CEEEECCCEEEECCCCCCCCCHHHHHCCCEEEEEECCEECCCCCCCEEEEECCHHHHHHC
NKEELDTFDFEELVKEKLELVKMDNAFLSRSVNQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMADGQIIKTGGS
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEEECCEEEEECCC
DLALELERKGYEWTDNFVKET
CEEEEEECCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]